{ "type": "genome", "identifier": "GCF_900116605.1", "organism": "Pseudomonas marincola", "title": "Pseudomonas marincola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900116605.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216264", "wgs_master": "FPBC00000000.1", "refseq_category": "na", "taxid": "437900", "species_taxid": "437900", "organism_name": "Pseudomonas marincola", "infraspecific_name": "strain=JCM 14761", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/02", "asm_name": "IMG-taxon 2663763603 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900116605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/116/605/GCF_900116605.1_IMG-taxon_2663763603_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5020984", "genome_size_ungapped": "5020594", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900116605.1-RS_2024_04_24", "annotation_date": "2024-04-24", "total_gene_count": "4619", "protein_coding_gene_count": "4498", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-02", "dateModified": "2016-11-02", "datePublished": "2016-11-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas marincola" ], "sample_taxid": [ "437900" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.419 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5020984", "Number of Sequences": "33", "Longest Sequences (bp)": "973986", "N50 (bp)": "331565", "Gap Ratio (%)": "0.007767", "GCcontent (%)": "57.1", "Number of CDSs": "4570", "Average Protein Length": "321.5", "Coding Ratio (%)": "87.8", "Number of rRNAs": "4", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas marincola", "strain": "strain=JCM 14761", "accession": "GCA_900116605.1", "taxid": 437900, "species_taxid": 437900, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1655, "total_fragments": 1657, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas segetis", "strain": "strain=CIP 108523", "accession": "GCA_900188155.1", "taxid": 298908, "species_taxid": 298908, "relation_to_type": "type", "validated": true, "ani": 80.1478, "matched_fragments": 733, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas peli", "strain": "strain=DSM 17833", "accession": "GCA_900099645.1", "taxid": 592361, "species_taxid": 592361, "relation_to_type": "type", "validated": true, "ani": 80.0748, "matched_fragments": 644, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tumuqii", "strain": "strain=LAMW06", "accession": "GCA_013184545.1", "taxid": 2715755, "species_taxid": 2715755, "relation_to_type": "type", "validated": true, "ani": 79.7218, "matched_fragments": 709, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas borbori", "strain": "strain=DSM 17834", "accession": "GCA_900115555.1", "taxid": 289003, "species_taxid": 289003, "relation_to_type": "type", "validated": true, "ani": 79.7082, "matched_fragments": 702, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas benzenivorans", "strain": "strain=DSM 8628", "accession": "GCA_900100495.1", "taxid": 556533, "species_taxid": 556533, "relation_to_type": "type", "validated": true, "ani": 79.6521, "matched_fragments": 690, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas taeanensis", "strain": "strain=MS-3", "accession": "GCA_000498575.2", "taxid": 574962, "species_taxid": 574962, "relation_to_type": "type", "validated": true, "ani": 79.6195, "matched_fragments": 675, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cuatrocienegasensis", "strain": "strain=CIP 109853", "accession": "GCA_900110925.1", "taxid": 543360, "species_taxid": 543360, "relation_to_type": "type", "validated": true, "ani": 79.5427, "matched_fragments": 654, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 79.4261, "matched_fragments": 652, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ullengensis", "strain": "strain=UL070", "accession": "GCA_014174475.1", "taxid": 2759166, "species_taxid": 2759166, "relation_to_type": "type", "validated": true, "ani": 79.3836, "matched_fragments": 587, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas punonensis", "strain": "strain=CECT 8089", "accession": "GCA_900142655.1", "taxid": 1220495, "species_taxid": 1220495, "relation_to_type": "type", "validated": true, "ani": 79.3047, "matched_fragments": 552, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas argentinensis", "strain": "strain=CCUG 50743", "accession": "GCA_008801645.1", "taxid": 289370, "species_taxid": 289370, "relation_to_type": "type", "validated": true, "ani": 79.1786, "matched_fragments": 552, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas argentinensis", "strain": "strain=LMG 22563", "accession": "GCA_900113905.1", "taxid": 289370, "species_taxid": 289370, "relation_to_type": "type", "validated": true, "ani": 79.1704, "matched_fragments": 549, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas siliginis", "strain": "strain=SWRI31", "accession": "GCA_019145195.1", "taxid": 2842346, "species_taxid": 2842346, "relation_to_type": "type", "validated": true, "ani": 79.131, "matched_fragments": 515, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas triticicola", "strain": "strain=SWRI88", "accession": "GCA_019145375.1", "taxid": 2842345, "species_taxid": 2842345, "relation_to_type": "type", "validated": true, "ani": 79.0621, "matched_fragments": 535, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas jessenii", "strain": "strain=DSM 17150", "accession": "GCA_002236115.1", "taxid": 77298, "species_taxid": 77298, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9935, "matched_fragments": 547, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 78.938, "matched_fragments": 567, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 78.9207, "matched_fragments": 465, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas protegens", "strain": "strain=CHA0", "accession": "GCA_000397205.1", "taxid": 380021, "species_taxid": 380021, "relation_to_type": "type", "validated": true, "ani": 78.8678, "matched_fragments": 502, "total_fragments": 1657, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas protegens", "strain": "strain=CHA0", "accession": "GCA_900560965.1", "taxid": 380021, 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