{
    "type": "genome",
    "identifier": "GCF_900116645.1",
    "organism": "Pseudoduganella namucuonensis",
    "title": "Pseudoduganella namucuonensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900116645.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216552",
        "wgs_master": "FPBO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1035707",
        "species_taxid": "1035707",
        "organism_name": "Pseudoduganella namucuonensis",
        "infraspecific_name": "strain=CGMCC 1.11014",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/05",
        "asm_name": "IMG-taxon 2671180040 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900116645.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/116/645/GCF_900116645.1_IMG-taxon_2671180040_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8489111",
        "genome_size_ungapped": "8484814",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "103",
        "contig_count": "103",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900116645.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "7352",
        "protein_coding_gene_count": "7180",
        "non_coding_gene_count": "88",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-05",
    "dateModified": "2016-11-05",
    "datePublished": "2016-11-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudoduganella namucuonensis"
        ],
        "sample_taxid": [
            "1035707"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.316 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8489111",
        "Number of Sequences": "103",
        "Longest Sequences (bp)": "501006",
        "N50 (bp)": "164386",
        "Gap Ratio (%)": "0.050618",
        "GCcontent (%)": "66.7",
        "Number of CDSs": "7080",
        "Average Protein Length": "361.0",
        "Coding Ratio (%)": "90.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "86",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudoduganella namucuonensis",
                "strain": "strain=CGMCC 1.11014",
                "accession": "GCA_900116645.1",
                "taxid": 1035707,
                "species_taxid": 1035707,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2767,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudoduganella aquatica",
                "strain": "strain=FT127W",
                "accession": "GCA_009857595.1",
                "taxid": 2660641,
                "species_taxid": 2660641,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8115,
                "matched_fragments": 1494,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rugamonas fusca",
                "strain": "strain=FT3S",
                "accession": "GCA_014042365.1",
                "taxid": 2758568,
                "species_taxid": 2758568,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2311,
                "matched_fragments": 1186,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rugamonas brunnea",
                "strain": "strain=LX20W",
                "accession": "GCA_014042345.1",
                "taxid": 2758569,
                "species_taxid": 2758569,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2099,
                "matched_fragments": 1249,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rugamonas rivuli",
                "strain": "strain=FT103W",
                "accession": "GCA_009380165.1",
                "taxid": 2743358,
                "species_taxid": 2743358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1,
                "matched_fragments": 1337,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rugamonas aquatica",
                "strain": "strain=FT29W",
                "accession": "GCA_009380215.1",
                "taxid": 2743357,
                "species_taxid": 2743357,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0787,
                "matched_fragments": 1303,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rugamonas apoptosis",
                "strain": "strain=LX47W",
                "accession": "GCA_014042355.1",
                "taxid": 2758570,
                "species_taxid": 2758570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9638,
                "matched_fragments": 1219,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Duganella aceris",
                "strain": "strain=SAP-35",
                "accession": "GCA_011090165.1",
                "taxid": 2703883,
                "species_taxid": 2703883,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.892,
                "matched_fragments": 1346,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoduganella violacea",
                "strain": "strain=CECT 8897",
                "accession": "GCA_014191875.1",
                "taxid": 1715466,
                "species_taxid": 1715466,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6303,
                "matched_fragments": 1201,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Duganella aquatilis",
                "strain": "strain=FT26W",
                "accession": "GCA_009674565.1",
                "taxid": 2666082,
                "species_taxid": 2666082,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5954,
                "matched_fragments": 1260,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Duganella alba",
                "strain": "strain=FT9W",
                "accession": "GCA_009674495.1",
                "taxid": 2666081,
                "species_taxid": 2666081,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4622,
                "matched_fragments": 1264,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Duganella lactea",
                "strain": "strain=FT50W",
                "accession": "GCA_009857505.1",
                "taxid": 2692173,
                "species_taxid": 2692173,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3845,
                "matched_fragments": 1178,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoduganella buxea",
                "strain": "strain=KCTC 52429",
                "accession": "GCA_009720835.1",
                "taxid": 1949069,
                "species_taxid": 1949069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2624,
                "matched_fragments": 1193,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoduganella rivuli",
                "strain": "strain=FT92W",
                "accession": "GCA_009674485.1",
                "taxid": 2666085,
                "species_taxid": 2666085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2123,
                "matched_fragments": 1627,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoduganella buxea",
                "strain": "strain=CGMCC 1.15931",
                "accession": "GCA_014644155.1",
                "taxid": 1949069,
                "species_taxid": 1949069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1494,
                "matched_fragments": 1237,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Duganella dendranthematis",
                "strain": "strain=AF9R3",
                "accession": "GCA_012849375.1",
                "taxid": 2728021,
                "species_taxid": 2728021,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5826,
                "matched_fragments": 1180,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia forsythiae",
                "strain": "strain=GN2-R2",
                "accession": "GCA_012849555.1",
                "taxid": 2728020,
                "species_taxid": 2728020,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9641,
                "matched_fragments": 1155,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia glaciei",
                "strain": "strain=B448-2",
                "accession": "GCA_003011895.2",
                "taxid": 1524097,
                "species_taxid": 1524097,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.911,
                "matched_fragments": 977,
                "total_fragments": 2774,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900116645.1",
                "gtdb_species": "s__Pseudoduganella namucuonensis",
                "ani": 100.0,
                "matched_fragments": 2767,
                "total_fragments": 2774,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003053665.1",
                "gtdb_species": "s__Pseudoduganella sp003053665",
                "ani": 85.9673,
                "matched_fragments": 1629,
                "total_fragments": 2774,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.77",
                "min_intra_species_ani": "95.97",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_009857595.1",
                "gtdb_species": "s__Pseudoduganella aquatica_A",
                "ani": 85.7912,
                "matched_fragments": 1498,
                "total_fragments": 2774,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001425265.1",
                "gtdb_species": "s__Pseudoduganella sp001425265",
                "ani": 85.7247,
                "matched_fragments": 1621,
                "total_fragments": 2774,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001425045.1",
                "gtdb_species": "s__Pseudoduganella sp001425045",
                "ani": 85.7112,
                "matched_fragments": 1663,
                "total_fragments": 2774,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016461825.1",
                "gtdb_species": "s__Rugamonas sp016461825",
                "ani": 83.4284,
                "matched_fragments": 1323,
                "total_fragments": 2774,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rugamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009674485.1",
                "gtdb_species": "s__Pseudoduganella sp009674485",
                "ani": 82.1943,
                "matched_fragments": 1632,
                "total_fragments": 2774,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": -0.097,
        "doubling_h": null,
        "growth_tmp": 28.5,
        "optimum_tmp": 29.0,
        "optimum_ph": null,
        "genome_size": 6107837.0,
        "gc_content": 63.0,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pseudoduganella",
        "namucuonensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}