{ "type": "genome", "identifier": "GCF_900116765.1", "organism": "Jannaschia seohaensis", "title": "Jannaschia seohaensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900116765.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421539", "wgs_master": "UETC00000000.1", "refseq_category": "reference genome", "taxid": "475081", "species_taxid": "475081", "organism_name": "Jannaschia seohaensis", "infraspecific_name": "strain=DSM 25227", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/06/29", "asm_name": "IMG-taxon 2675903158 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900116765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/116/765/GCF_900116765.1_IMG-taxon_2675903158_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4842958", "genome_size_ungapped": "4842958", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900116765.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4667", "protein_coding_gene_count": "4519", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-06-29", "dateModified": "2018-06-29", "datePublished": "2018-06-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Jannaschia seohaensis" ], "sample_taxid": [ "475081" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.327 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4842958", "Number of Sequences": "37", "Longest Sequences (bp)": "986580", "N50 (bp)": "334800", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "4734", "Average Protein Length": "303.6", "Coding Ratio (%)": "89.0", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Jannaschia seohaensis", "strain": "strain=DSM 25227", "accession": "GCA_900116765.1", "taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia saemankumensis", "strain": "strain=DSM 100565", "accession": "GCA_900141735.1", "taxid": 1447782, "species_taxid": 1447782, "relation_to_type": "type", "validated": true, "ani": 78.2927, "matched_fragments": 452, "total_fragments": 1594, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.2459, "matched_fragments": 424, "total_fragments": 1594, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 78.1958, "matched_fragments": 402, "total_fragments": 1594, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia sediminis", "strain": "strain=SS33", "accession": "GCA_004358695.1", "taxid": 2547833, "species_taxid": 2547833, "relation_to_type": "type", "validated": true, "ani": 78.1213, "matched_fragments": 401, "total_fragments": 1594, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hasllibacter halocynthiae", "strain": "strain=DSM 29318", "accession": "GCA_003003095.1", "taxid": 595589, "species_taxid": 595589, "relation_to_type": "type", "validated": true, "ani": 77.9781, "matched_fragments": 350, "total_fragments": 1594, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 77.9759, "matched_fragments": 387, "total_fragments": 1594, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontivivens ytuae", "strain": 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