{
    "type": "genome",
    "identifier": "GCF_900116895.1",
    "organism": "Pseudidiomarina donghaiensis",
    "title": "Pseudidiomarina donghaiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900116895.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04488139",
        "wgs_master": "FPCF00000000.1",
        "refseq_category": "na",
        "taxid": "519452",
        "species_taxid": "519452",
        "organism_name": "Pseudidiomarina donghaiensis",
        "infraspecific_name": "strain=CGMCC 1.7284",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/11/02",
        "asm_name": "IMG-taxon 2619618818 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900116895.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/116/895/GCF_900116895.1_IMG-taxon_2619618818_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2574154",
        "genome_size_ungapped": "2574154",
        "gc_percent": "48.000000",
        "replicon_count": "0",
        "scaffold_count": "17",
        "contig_count": "17",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-08-12",
        "total_gene_count": "2519",
        "protein_coding_gene_count": "2436",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-11-02",
    "dateModified": "2016-11-02",
    "datePublished": "2016-11-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudidiomarina donghaiensis"
        ],
        "sample_taxid": [
            "519452"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.732 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2574154",
        "Number of Sequences": "17",
        "Longest Sequences (bp)": "1204504",
        "N50 (bp)": "239122",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.1",
        "Number of CDSs": "2456",
        "Average Protein Length": "322.3",
        "Coding Ratio (%)": "92.2",
        "Number of rRNAs": "4",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudidiomarina donghaiensis",
                "strain": "strain=CGMCC 1.7284",
                "accession": "GCA_900116895.1",
                "taxid": 519452,
                "species_taxid": 519452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 849,
                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudidiomarina donghaiensis",
                "strain": "strain=908033",
                "accession": "GCA_003987405.1",
                "taxid": 519452,
                "species_taxid": 519452,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9972,
                "matched_fragments": 842,
                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudidiomarina woesei",
                "strain": "strain=DSM 27808",
                "accession": "GCA_001418345.1",
                "taxid": 1381080,
                "species_taxid": 1381080,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.103,
                "matched_fragments": 747,
                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudidiomarina woesei",
                "strain": "strain=DSM 27808",
                "accession": "GCA_001517265.1",
                "taxid": 1381080,
                "species_taxid": 1381080,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.084,
                "matched_fragments": 748,
                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudidiomarina marina",
                "strain": "strain=PIM1",
                "accession": "GCA_003987045.1",
                "taxid": 502366,
                "species_taxid": 502366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1519,
                "matched_fragments": 392,
                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudidiomarina tainanensis",
                "strain": "strain=PIN1",
                "accession": "GCA_004214835.1",
                "taxid": 502365,
                "species_taxid": 502365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.021,
                "matched_fragments": 404,
                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudidiomarina gelatinasegens",
                "strain": "strain=R04H25",
                "accession": "GCA_004025325.1",
                "taxid": 2487740,
                "species_taxid": 2487740,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3322,
                "matched_fragments": 415,
                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudidiomarina insulisalsae",
                "strain": "strain=CVS-6",
                "accession": "GCA_003987065.1",
                "taxid": 575789,
                "species_taxid": 575789,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0218,
                "matched_fragments": 176,
                "total_fragments": 851,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900116895.1",
                "gtdb_species": "s__Pseudidiomarina donghaiensis",
                "ani": 100.0,
                "matched_fragments": 849,
                "total_fragments": 851,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudidiomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018222985.1",
                "gtdb_species": "s__Pseudidiomarina sp018222985",
                "ani": 91.8539,
                "matched_fragments": 709,
                "total_fragments": 851,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudidiomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001418345.1",
                "gtdb_species": "s__Pseudidiomarina woesei",
                "ani": 91.103,
                "matched_fragments": 747,
                "total_fragments": 851,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudidiomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002279005.1",
                "gtdb_species": "s__Pseudidiomarina sp002279005",
                "ani": 81.2313,
                "matched_fragments": 317,
                "total_fragments": 851,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudidiomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003987045.1",
                "gtdb_species": "s__Pseudidiomarina marina",
                "ani": 81.1455,
                "matched_fragments": 392,
                "total_fragments": 851,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudidiomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.46",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004214835.1",
                "gtdb_species": "s__Pseudidiomarina tainanensis",
                "ani": 81.021,
                "matched_fragments": 404,
                "total_fragments": 851,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudidiomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "97.72",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009734345.1",
                "gtdb_species": "s__Pseudidiomarina andamanensis",
                "ani": 80.7065,
                "matched_fragments": 417,
                "total_fragments": 851,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudidiomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004025325.1",
                "gtdb_species": "s__Pseudidiomarina gelatinasegens",
                "ani": 80.3184,
                "matched_fragments": 416,
                "total_fragments": 851,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudidiomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003987395.1",
                "gtdb_species": "s__Pseudidiomarina aquimaris",
                "ani": 79.7743,
                "matched_fragments": 218,
                "total_fragments": 851,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudidiomarina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.26",
                "min_intra_species_ani": "97.14",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Pseudidiomarina",
        "donghaiensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}