{ "type": "genome", "identifier": "GCF_900117315.1", "organism": "Bacillus massilionigeriensis", "title": "Bacillus massilionigeriensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900117315.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4534506", "wgs_master": "FPDX00000000.1", "refseq_category": "reference genome", "taxid": "1805475", "species_taxid": "1805475", "organism_name": "Bacillus massilionigeriensis", "infraspecific_name": "strain=Marseille-P2348T", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/08", "asm_name": "PRJEB17645", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900117315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/117/315/GCF_900117315.1_PRJEB17645", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4216923", "genome_size_ungapped": "4212891", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900117315.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4200", "protein_coding_gene_count": "3987", "non_coding_gene_count": "155", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-08", "dateModified": "2016-11-08", "datePublished": "2016-11-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillus massilionigeriensis" ], "sample_taxid": [ "1805475" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.186 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4216923", "Number of Sequences": "13", "Longest Sequences (bp)": "4164523", "N50 (bp)": "4164523", "Gap Ratio (%)": "0.096540", "GCcontent (%)": "36.7", "Number of CDSs": "4058", "Average Protein Length": "287.1", "Coding Ratio (%)": "82.9", "Number of rRNAs": "20", "Number of tRNAs": "131", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacillus massilionigeriensis", "strain": "strain=Marseille-P2384", "accession": "GCA_900117315.1", "taxid": 1805475, "species_taxid": 1805475, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1400, "total_fragments": 1400, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bacillus dakarensis", "strain": "strain=Marseille-P3515", "accession": "GCA_900156875.1", "taxid": 1926278, "species_taxid": 1926278, "relation_to_type": "type", "validated": true, "ani": 78.3647, "matched_fragments": 165, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus endolithicus", "strain": "strain=KCTC 33579", "accession": "GCA_023078335.1", "taxid": 1535204, "species_taxid": 1535204, "relation_to_type": "type", "validated": true, "ani": 78.2608, "matched_fragments": 116, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus solani", "strain": "strain=FJAT-18043", "accession": "GCA_001420595.1", "taxid": 1637975, "species_taxid": 1637975, "relation_to_type": "type", "validated": true, "ani": 77.9939, "matched_fragments": 191, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia taxi", "strain": "strain=M5HDSG1-1", "accession": "GCA_004005475.1", "taxid": 2499688, "species_taxid": 2499688, "relation_to_type": "type", "validated": true, "ani": 77.6739, "matched_fragments": 100, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus dielmonensis", "strain": "strain=FF4", "accession": "GCA_000612665.1", "taxid": 1347369, "species_taxid": 1347369, "relation_to_type": "type", "validated": true, "ani": 77.6467, "matched_fragments": 114, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus yapensis", "strain": "strain=XXST-01", "accession": "GCA_003966255.1", "taxid": 2492960, "species_taxid": 2492960, "relation_to_type": "type", "validated": true, "ani": 77.6069, "matched_fragments": 178, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus yapensis", "strain": "strain=XXST-01", 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"species_taxid": 264697, "relation_to_type": "type", "validated": true, "ani": 77.5037, "matched_fragments": 61, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus benzoevorans", "strain": "strain=DSM 5391", "accession": "GCA_014207535.1", "taxid": 1456, "species_taxid": 1456, "relation_to_type": "type", "validated": true, "ani": 77.4969, "matched_fragments": 116, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus harenae", "strain": "strain=Y40", "accession": "GCA_013343715.1", "taxid": 2213203, "species_taxid": 2213203, "relation_to_type": "type", "validated": true, "ani": 77.4281, "matched_fragments": 115, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Robertmurraya massiliosenegalensis", "strain": "strain=JC6", "accession": "GCA_000311725.1", "taxid": 1287657, "species_taxid": 1287657, "relation_to_type": "type", 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"matched_fragments": 143, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus stercorigallinarum", "strain": "strain=Sa5YUA1", "accession": "GCA_014836495.1", "taxid": 2762240, "species_taxid": 2762240, "relation_to_type": "type", "validated": true, "ani": 77.0542, "matched_fragments": 138, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 77.018, "matched_fragments": 135, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus safensis subsp. osmophilus", "strain": "strain=BC09", "accession": "GCA_003254445.1", "taxid": 1982610, "species_taxid": 561879, "relation_to_type": "type", "validated": true, "ani": 77.0163, "matched_fragments": 60, 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"below_threshold" }, { "organism_name": "Metabacillus fastidiosus", "strain": "strain=NBRC 101226", "accession": "GCA_001591625.1", "taxid": 1458, "species_taxid": 1458, "relation_to_type": "type", "validated": true, "ani": 76.5621, "matched_fragments": 100, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900117315.1", "gtdb_species": "s__Bacillus_BE massilionigeriensis", "ani": 100.0, "matched_fragments": 1400, "total_fragments": 1400, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_BE", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900156875.1", "gtdb_species": "s__Robertmurraya 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1400, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_BU", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001420595.1", "gtdb_species": "s__Cytobacillus solani", "ani": 77.9512, "matched_fragments": 189, "total_fragments": 1400, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_008710145.1", "gtdb_species": "s__Bacillus_BD endozanthoxylicus", "ani": 77.928, "matched_fragments": 142, "total_fragments": 1400, "gtdb_taxonomy": 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