{ "type": "genome", "identifier": "GCF_900119105.1", "organism": "Chitinophaga sancti", "title": "Chitinophaga sancti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900119105.1", "bioproject": "PRJNA224116", "biosample": "SAMN05661012", "wgs_master": "FPIZ00000000.1", "refseq_category": "na", "taxid": "1004", "species_taxid": "1004", "organism_name": "Chitinophaga sancti", "infraspecific_name": "strain=DSM 784", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/12", "asm_name": "IMG-taxon 2595699005 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900119105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/119/105/GCF_900119105.1_IMG-taxon_2595699005_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8244109", "genome_size_ungapped": "8238206", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "88", "contig_count": "88", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900119105.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "6651", "protein_coding_gene_count": "6523", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-12", "dateModified": "2016-11-12", "datePublished": "2016-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophaga sancti DSM 784" ], "sample_taxid": [ "1121282" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.343 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8244109", "Number of Sequences": "88", "Longest Sequences (bp)": "612109", "N50 (bp)": "286714", "Gap Ratio (%)": "0.071603", "GCcontent (%)": "44.2", "Number of CDSs": "6414", "Average Protein Length": "367.9", "Coding Ratio (%)": "85.9", "Number of rRNAs": "1", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinophaga sancti", "strain": "strain=DSM 784", "accession": "GCA_900119105.1", "taxid": 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"below_threshold" }, { "organism_name": "Chitinophaga rhizosphaerae", "strain": "strain=T16R-86", "accession": "GCA_003958645.1", "taxid": 1864947, "species_taxid": 1864947, "relation_to_type": "type", "validated": true, "ani": 76.6985, "matched_fragments": 128, "total_fragments": 2711, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga chungangae", "strain": "strain=MAH-28", "accession": "GCA_017742215.1", "taxid": 2821488, "species_taxid": 2821488, "relation_to_type": "type", "validated": true, "ani": 76.474, "matched_fragments": 149, "total_fragments": 2711, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter rivuli", "strain": "strain=IMCC34838", "accession": "GCA_018595685.2", "taxid": 2838156, "species_taxid": 2838156, "relation_to_type": "type", "validated": true, "ani": 75.9917, "matched_fragments": 55, "total_fragments": 2711, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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"psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chitinophaga", "sancti" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }