{ "type": "genome", "identifier": "GCF_900119145.1", "organism": "Cellulophaga fucicola", "title": "Cellulophaga fucicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900119145.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660313", "wgs_master": "FPIY00000000.1", "refseq_category": "reference genome", "taxid": "76595", "species_taxid": "76595", "organism_name": "Cellulophaga fucicola", "infraspecific_name": "strain=DSM 24786", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/12", "asm_name": "IMG-taxon 2595699004 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900119145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/119/145/GCF_900119145.1_IMG-taxon_2595699004_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3922041", "genome_size_ungapped": "3915951", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900119145.1-RS_2024_04_25", "annotation_date": "2024-04-25", "total_gene_count": "3479", "protein_coding_gene_count": "3421", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-12", "dateModified": "2016-11-12", "datePublished": "2016-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulophaga fucicola DSM 24786" ], "sample_taxid": [ "1121273" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark: Kattegat,Hirsholm" ], "sample_host_location_id": [], "data_size": "1.079 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3922041", "Number of Sequences": "22", "Longest Sequences (bp)": "1401497", "N50 (bp)": "983305", "Gap Ratio (%)": "0.155276", "GCcontent (%)": "32.1", "Number of CDSs": "3430", "Average Protein Length": "343.3", "Coding Ratio (%)": "90.1", "Number of rRNAs": "6", "Number of tRNAs": "33", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulophaga fucicola", "strain": "strain=DSM 24786", "accession": "GCA_900119145.1", "taxid": 76595, "species_taxid": 76595, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1293, "total_fragments": 1297, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cellulophaga lytica", "strain": "strain=DSM 7489", "accession": "GCA_000190595.1", "taxid": 979, "species_taxid": 979, "relation_to_type": "type", "validated": true, "ani": 85.5839, "matched_fragments": 1021, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga omnivescoria", "strain": "strain=W5C", "accession": "GCA_001999725.1", "taxid": 1888890, "species_taxid": 1888890, "relation_to_type": "type", "validated": true, "ani": 85.0163, "matched_fragments": 990, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga baltica", "strain": "strain=DSM 24729", "accession": "GCA_900102165.1", "taxid": 76594, "species_taxid": 76594, 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77.3296, "matched_fragments": 178, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter spongiicola", "strain": "strain=DSM 25233", "accession": "GCA_004364165.1", "taxid": 1206753, "species_taxid": 1206753, "relation_to_type": "type", "validated": true, "ani": 77.1821, "matched_fragments": 252, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia barbeyronii", "strain": "strain=KMM 6746", "accession": "GCA_018603515.1", "taxid": 2748009, "species_taxid": 2748009, "relation_to_type": "type", "validated": true, "ani": 77.106, "matched_fragments": 213, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=KCTC 42117", "accession": "GCA_003008435.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 76.9982, "matched_fragments": 182, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris", "strain": "strain=CECT 8597", "accession": "GCA_014191595.1", "taxid": 1520893, "species_taxid": 393060, "relation_to_type": "type", "validated": true, "ani": 76.9972, "matched_fragments": 183, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 76.8342, "matched_fragments": 173, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Formosa agariphila", "strain": "strain=type strain: KMM 3901", "accession": "GCA_000723205.1", "taxid": 320324, "species_taxid": 320324, "relation_to_type": "type", "validated": true, "ani": 76.7372, "matched_fragments": 192, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter dokdonensis", "strain": "strain=DSW-8", "accession": "GCA_001447995.1", "taxid": 320912, "species_taxid": 320912, "relation_to_type": "type", "validated": true, "ani": 76.6233, "matched_fragments": 213, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomarinibacterium sedimenti", "strain": "strain=CAU 1614", "accession": "GCA_019312585.1", "taxid": 2857106, "species_taxid": 2857106, "relation_to_type": "type", "validated": true, "ani": 76.3368, "matched_fragments": 63, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Abyssalbus ytuae", "strain": "strain=MT3330", "accession": "GCA_022807975.1", "taxid": 2926907, "species_taxid": 2926907, "relation_to_type": "type", "validated": true, "ani": 75.8357, "matched_fragments": 86, "total_fragments": 1297, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900119145.1", "gtdb_species": "s__Cellulophaga fucicola", "ani": 100.0, "matched_fragments": 1293, "total_fragments": 1297, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002813425.1", "gtdb_species": "s__Cellulophaga sp002813425", "ani": 85.8123, "matched_fragments": 1039, "total_fragments": 1297, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Cellulophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.277, "cell_length": 0.405, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 23.8, "optimum_ph": 7.55, "genome_size": 3922041.0, "gc_content": 33.522, "coding_genes": 3746.366, "rRNA16S_genes": 4.333, "tRNA_genes": 42.111, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cellulophaga", "fucicola" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }