{ "type": "genome", "identifier": "GCF_900119835.1", "organism": "Lactococcus chungangensis CAU 28 = DSM 22330", "title": "Lactococcus chungangensis CAU 28 = DSM 22330", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900119835.1", "bioproject": "PRJNA224116", "biosample": "SAMN02746068", "wgs_master": "FPKS00000000.1", "refseq_category": "na", "taxid": "1122154", "species_taxid": "451457", "organism_name": "Lactococcus chungangensis CAU 28 = DSM 22330", "infraspecific_name": "strain=DSM 22330", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/11/18", "asm_name": "IMG-taxon 2599185262 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900119835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/119/835/GCF_900119835.1_IMG-taxon_2599185262_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2214941", "genome_size_ungapped": "2212823", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900119835.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "2229", "protein_coding_gene_count": "2133", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-11-18", "dateModified": "2016-11-18", "datePublished": "2016-11-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Lactococcus chungangensis CAU 28 = DSM 22330" ], "sample_taxid": [ "1122154" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Cheonan" ], "sample_host_location_id": [], "data_size": "0.628 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2214941", "Number of Sequences": "44", "Longest Sequences (bp)": "324903", "N50 (bp)": "248672", "Gap Ratio (%)": "0.095623", "GCcontent (%)": "38.7", "Number of CDSs": "2149", "Average Protein Length": "294.1", "Coding Ratio (%)": "85.6", "Number of rRNAs": "2", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactococcus chungangensis", "strain": "strain=DSM 22330", "accession": "GCA_900119835.1", "taxid": 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78.9779, "matched_fragments": 195, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011170085.1", "gtdb_species": "s__Lactococcus_A hodotermopsidis", "ani": 78.2184, "matched_fragments": 192, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": -0.302, "doubling_h": -0.114, "growth_tmp": 34.0, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 2243208.0, "gc_content": 37.699, "coding_genes": 2184.408, "rRNA16S_genes": 4.75, "tRNA_genes": 58.609, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.857, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.142, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lactococcus", "chungangensis", "CAU", "28", "=", "DSM", "22330" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }