{ "type": "genome", "identifier": "GCF_900128925.1", "organism": "Modicisalibacter ilicicola DSM 19980", "title": "Modicisalibacter ilicicola DSM 19980", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900128925.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745148", "wgs_master": "FQUJ00000000.1", "refseq_category": "reference genome", "taxid": "1121942", "species_taxid": "480814", "organism_name": "Modicisalibacter ilicicola DSM 19980", "infraspecific_name": "strain=DSM 19980", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2582581268 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900128925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/128/925/GCF_900128925.1_IMG-taxon_2582581268_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3960292", "genome_size_ungapped": "3954538", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900128925.1-RS_2024_09_08", "annotation_date": "2024-09-08", "total_gene_count": "3772", "protein_coding_gene_count": "3660", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Modicisalibacter ilicicola DSM 19980" ], "sample_taxid": [ "1121942" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain:Santa Pola, Mediterranean coast" ], "sample_host_location_id": [], "data_size": "1.104 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3960292", "Number of Sequences": "40", "Longest Sequences (bp)": "537801", "N50 (bp)": "220667", "Gap Ratio (%)": "0.145292", "GCcontent (%)": "63.2", "Number of CDSs": "3686", "Average Protein Length": "321.6", "Coding Ratio (%)": "89.8", "Number of rRNAs": "4", "Number of tRNAs": "54", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas ilicicola", "strain": "strain=DSM 19980", "accession": "GCA_900128925.1", 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"type", "validated": true, "ani": 80.751, "matched_fragments": 627, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zincidurans", "strain": "strain=B6", "accession": "GCA_000731955.1", "taxid": 1178777, "species_taxid": 1178777, "relation_to_type": "type", "validated": true, "ani": 80.656, "matched_fragments": 641, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lactosivorans", "strain": "strain=KCTC 52281", "accession": "GCA_003254665.1", "taxid": 2185141, "species_taxid": 2185141, "relation_to_type": "type", "validated": true, "ani": 80.5284, "matched_fragments": 617, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 80.5279, "matched_fragments": 611, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas xianhensis", "strain": "strain=CGMCC 1.6848", "accession": "GCA_900113605.1", "taxid": 442341, "species_taxid": 442341, "relation_to_type": "type", "validated": true, "ani": 80.4446, "matched_fragments": 622, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, "relation_to_type": "type", "validated": true, "ani": 80.4416, "matched_fragments": 591, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas muralis", "strain": "strain=DSM 14789", "accession": "GCA_900102945.1", "taxid": 119000, "species_taxid": 119000, "relation_to_type": "type", "validated": true, "ani": 80.4298, "matched_fragments": 655, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 80.4235, "matched_fragments": 613, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas nitroreducens", "strain": "strain=11S", "accession": "GCA_003966155.1", "taxid": 447425, "species_taxid": 447425, "relation_to_type": "type", "validated": true, "ani": 80.3245, "matched_fragments": 679, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alimentaria", "strain": "strain=DSM 15356", "accession": "GCA_009902005.1", "taxid": 147248, "species_taxid": 147248, "relation_to_type": "type", "validated": true, "ani": 80.3047, "matched_fragments": 560, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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