{
    "type": "genome",
    "identifier": "GCF_900129015.1",
    "organism": "Cnuella takakiae",
    "title": "Cnuella takakiae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900129015.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05444008",
        "wgs_master": "FQUO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1302690",
        "species_taxid": "1302690",
        "organism_name": "Cnuella takakiae",
        "infraspecific_name": "strain=DSM 26897",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/12/03",
        "asm_name": "IMG-taxon 2695420933 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900129015.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/015/GCF_900129015.1_IMG-taxon_2695420933_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5659359",
        "genome_size_ungapped": "5659359",
        "gc_percent": "50.000000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900129015.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "4713",
        "protein_coding_gene_count": "4633",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-12-03",
    "dateModified": "2016-12-03",
    "datePublished": "2016-12-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Cnuella takakiae"
        ],
        "sample_taxid": [
            "1302690"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.604 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5659359",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "575358",
        "N50 (bp)": "321573",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.0",
        "Number of CDSs": "4628",
        "Average Protein Length": "344.2",
        "Coding Ratio (%)": "84.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Cnuella takakiae",
                "strain": "strain=DSM 26897",
                "accession": "GCA_900129015.1",
                "taxid": 1302690,
                "species_taxid": 1302690,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1869,
                "total_fragments": 1870,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Cnuella takakiae",
                "strain": "strain=RG1-1",
                "accession": "GCA_001953305.1",
                "taxid": 1302690,
                "species_taxid": 1302690,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9775,
                "matched_fragments": 1863,
                "total_fragments": 1870,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Flaviaesturariibacter flavus",
                "strain": "strain=17J68-12",
                "accession": "GCA_004337505.1",
                "taxid": 2502780,
                "species_taxid": 2502780,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2805,
                "matched_fragments": 201,
                "total_fragments": 1870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavisolibacter nicotianae",
                "strain": "strain=X7X",
                "accession": "GCA_003628535.1",
                "taxid": 2364882,
                "species_taxid": 2364882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8826,
                "matched_fragments": 213,
                "total_fragments": 1870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flaviaesturariibacter aridisoli",
                "strain": "strain=17J68-15",
                "accession": "GCA_004343705.1",
                "taxid": 2545761,
                "species_taxid": 2545761,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8285,
                "matched_fragments": 205,
                "total_fragments": 1870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavihumibacter rivuli",
                "strain": "strain=IMCC34838",
                "accession": "GCA_018595685.2",
                "taxid": 2838156,
                "species_taxid": 2838156,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4489,
                "matched_fragments": 110,
                "total_fragments": 1870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraflavitalea devenefica",
                "strain": "strain=X16",
                "accession": "GCA_011759375.1",
                "taxid": 2716334,
                "species_taxid": 2716334,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3734,
                "matched_fragments": 106,
                "total_fragments": 1870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chitinophaga lutea",
                "strain": "strain=ZY74",
                "accession": "GCA_003813775.1",
                "taxid": 2488634,
                "species_taxid": 2488634,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3409,
                "matched_fragments": 88,
                "total_fragments": 1870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudobacter ginsenosidimutans",
                "strain": "strain=Gsoil 221",
                "accession": "GCA_007970185.1",
                "taxid": 661488,
                "species_taxid": 661488,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1782,
                "matched_fragments": 100,
                "total_fragments": 1870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella koreensis",
                "strain": "strain=DSM 17620",
                "accession": "GCA_002077985.1",
                "taxid": 354356,
                "species_taxid": 354356,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9757,
                "matched_fragments": 126,
                "total_fragments": 1870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Niastella vici",
                "strain": "strain=DJ57",
                "accession": "GCA_002077945.1",
                "taxid": 1703345,
                "species_taxid": 1703345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9133,
                "matched_fragments": 134,
                "total_fragments": 1870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Filimonas effusa",
                "strain": "strain=TTM-71",
                "accession": "GCA_004118675.1",
                "taxid": 2508721,
                "species_taxid": 2508721,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7317,
                "matched_fragments": 68,
                "total_fragments": 1870,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001953305.1",
                "gtdb_species": "s__Cnuella takakiae",
                "ani": 99.9775,
                "matched_fragments": 1863,
                "total_fragments": 1870,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Cnuella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003332885.2",
                "gtdb_species": "s__Paracnuella aquatica",
                "ani": 78.5369,
                "matched_fragments": 552,
                "total_fragments": 1870,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Paracnuella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.63",
                "min_intra_species_ani": "95.63",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004337505.1",
                "gtdb_species": "s__Flaviaesturariibacter flavus",
                "ani": 77.2805,
                "matched_fragments": 201,
                "total_fragments": 1870,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flaviaesturariibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013327885.1",
                "gtdb_species": "s__Flavisolibacter sp013327885",
                "ani": 76.9245,
                "matched_fragments": 248,
                "total_fragments": 1870,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003628535.1",
                "gtdb_species": "s__Flavisolibacter nicotianae",
                "ani": 76.8826,
                "matched_fragments": 213,
                "total_fragments": 1870,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004343705.1",
                "gtdb_species": "s__Flaviaesturariibacter aridisoli",
                "ani": 76.8316,
                "matched_fragments": 203,
                "total_fragments": 1870,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flaviaesturariibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004173235.1",
                "gtdb_species": "s__Flaviaesturariibacter sp004173235",
                "ani": 76.6062,
                "matched_fragments": 159,
                "total_fragments": 1870,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flaviaesturariibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015069695.1",
                "gtdb_species": "s__JADCRZ01 sp015069695",
                "ani": 75.9705,
                "matched_fragments": 123,
                "total_fragments": 1870,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__JADCRZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900109685.1",
                "gtdb_species": "s__Chitinophaga rupis",
                "ani": 75.8765,
                "matched_fragments": 102,
                "total_fragments": 1870,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Chitinophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014529935.1",
                "gtdb_species": "s__Chitinophaga qingshengii",
                "ani": 75.6083,
                "matched_fragments": 69,
                "total_fragments": 1870,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Chitinophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 28.0,
        "optimum_ph": null,
        "genome_size": 5659359.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Cnuella",
        "takakiae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}