{ "type": "genome", "identifier": "GCF_900129245.1", "organism": "Chryseobacterium arachidis", "title": "Chryseobacterium arachidis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900129245.1", "bioproject": "PRJNA224116", "biosample": "SAMN05443633", "wgs_master": "FQUT00000000.1", "refseq_category": "reference genome", "taxid": "1416778", "species_taxid": "1416778", "organism_name": "Chryseobacterium arachidis", "infraspecific_name": "strain=DSM 27619", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2695420930 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900129245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/245/GCF_900129245.1_IMG-taxon_2695420930_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4947868", "genome_size_ungapped": "4947868", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900129245.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4530", "protein_coding_gene_count": "4413", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium arachidis" ], "sample_taxid": [ "1416778" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.384 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4947868", "Number of Sequences": "34", "Longest Sequences (bp)": "802538", "N50 (bp)": "302134", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.6", "Number of CDSs": "4387", "Average Protein Length": "325.0", "Coding Ratio (%)": "86.4", "Number of rRNAs": "3", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium arachidis", "strain": "strain=DSM 27619", "accession": "GCA_900129245.1", 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1945581, "relation_to_type": "type", "validated": true, "ani": 82.8356, "matched_fragments": 907, "total_fragments": 1628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gambrini", "strain": "strain=DSM 18014", "accession": "GCA_900156825.1", "taxid": 373672, "species_taxid": 373672, "relation_to_type": "type", "validated": true, "ani": 82.7864, "matched_fragments": 921, "total_fragments": 1628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium geocarposphaerae", "strain": "strain=DSM 27617", "accession": "GCA_002797535.1", "taxid": 1416776, "species_taxid": 1416776, "relation_to_type": "type", "validated": true, "ani": 82.7346, "matched_fragments": 874, "total_fragments": 1628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": 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"matched_fragments": 815, "total_fragments": 1628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cheonjiense", "strain": "strain=RJ-7-14", "accession": "GCA_012927265.1", "taxid": 2728845, "species_taxid": 2728845, "relation_to_type": "type", "validated": true, "ani": 80.8616, "matched_fragments": 825, "total_fragments": 1628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 80.4622, "matched_fragments": 754, "total_fragments": 1628, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium shigense", "strain": "strain=DSM 17126", "accession": "GCA_002943655.1", "taxid": 297244, "species_taxid": 297244, "relation_to_type": "type", "validated": true, "ani": 80.0606, "matched_fragments": 703, 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