{ "type": "genome", "identifier": "GCF_900129295.1", "organism": "Flavisolibacter ginsengisoli DSM 18119", "title": "Flavisolibacter ginsengisoli DSM 18119", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900129295.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745131", "wgs_master": "FQUU00000000.1", "refseq_category": "reference genome", "taxid": "1121884", "species_taxid": "462367", "organism_name": "Flavisolibacter ginsengisoli DSM 18119", "infraspecific_name": "strain=DSM 18119", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2582580745 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900129295.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/295/GCF_900129295.1_IMG-taxon_2582580745_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4677460", "genome_size_ungapped": "4676330", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "55", "contig_count": "55", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900129295.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4162", "protein_coding_gene_count": "4098", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavisolibacter ginsengisoli DSM 18119" ], "sample_taxid": [ "1121884" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Pocheon Province, South Korea" ], "sample_host_location_id": [], "data_size": "1.326 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4677460", "Number of Sequences": "55", "Longest Sequences (bp)": "479534", "N50 (bp)": "210944", "Gap Ratio (%)": "0.024158", "GCcontent (%)": "40.6", "Number of CDSs": "3999", "Average Protein Length": "330.4", "Coding Ratio (%)": "84.7", "Number of rRNAs": "4", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavisolibacter ginsengisoli", "strain": "strain=DSM 18119", "accession": 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1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter rivuli", "strain": "strain=IMCC34838", "accession": "GCA_018595685.2", "taxid": 2838156, "species_taxid": 2838156, "relation_to_type": "type", "validated": true, "ani": 76.2846, "matched_fragments": 58, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter solisilvae", "strain": "strain=3-3", "accession": "GCA_000814475.1", "taxid": 1349421, "species_taxid": 1349421, "relation_to_type": "type", "validated": true, "ani": 76.2773, "matched_fragments": 61, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudobacter ginsenosidimutans", "strain": "strain=DSM 18116", "accession": "GCA_004291315.1", "taxid": 661488, "species_taxid": 661488, "relation_to_type": "type", "validated": true, "ani": 76.2463, "matched_fragments": 53, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter cheonanensis", "strain": "strain=WS16", "accession": "GCA_022352215.1", "taxid": 1442385, "species_taxid": 1442385, "relation_to_type": "type", "validated": true, "ani": 76.0879, "matched_fragments": 62, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Filimonas lacunae", "strain": "strain=DSM 21054", "accession": "GCA_900156765.1", "taxid": 477680, "species_taxid": 477680, "relation_to_type": "type", "validated": true, "ani": 76.0733, "matched_fragments": 64, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_002077935.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 76.0381, "matched_fragments": 64, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacibacter luteus", "strain": "strain=TTM-7", "accession": "GCA_004118265.1", "taxid": 2508719, "species_taxid": 2508719, "relation_to_type": "type", "validated": true, "ani": 75.8034, "matched_fragments": 63, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niastella yeongjuensis", "strain": "strain=DSM 17621", "accession": "GCA_900110245.1", "taxid": 354355, "species_taxid": 354355, "relation_to_type": "type", "validated": true, "ani": 75.7526, "matched_fragments": 62, "total_fragments": 1534, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900129295.1", "gtdb_species": "s__Flavisolibacter ginsengisoli", "ani": 100.0, "matched_fragments": 1534, "total_fragments": 1534, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter", "ani_circumscription_radius": 95.0, 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