{ "type": "genome", "identifier": "GCF_900129345.1", "organism": "Ruegeria intermedia", "title": "Ruegeria intermedia", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900129345.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444279", "wgs_master": "FQVK00000000.1", "refseq_category": "reference genome", "taxid": "996115", "species_taxid": "996115", "organism_name": "Ruegeria intermedia", "infraspecific_name": "strain=DSM 29341", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/11", "asm_name": "IMG-taxon 2695420938 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900129345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/345/GCF_900129345.1_IMG-taxon_2695420938_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3858813", "genome_size_ungapped": "3858415", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "86", "contig_count": "86", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900129345.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3924", "protein_coding_gene_count": "3780", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-11", "dateModified": "2019-09-11", "datePublished": "2019-09-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Ruegeria intermedia" ], "sample_taxid": [ "996115" ], "sample_host_organism": 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1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria denitrificans", "strain": "strain=CECT 5091", "accession": "GCA_001458295.1", "taxid": 1715692, "species_taxid": 1715692, "relation_to_type": "type", "validated": true, "ani": 80.6907, "matched_fragments": 726, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria atlantica", "strain": "strain=CECT 4292", "accession": "GCA_001458195.1", "taxid": 81569, "species_taxid": 81569, "relation_to_type": "suspected-type", "validated": true, "ani": 80.1901, "matched_fragments": 704, "total_fragments": 1244, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquaemixtae", "strain": "strain=CECT 8399", "accession": "GCA_001458395.1", "taxid": 1396826, "species_taxid": 1396826, "relation_to_type": "type", "validated": true, "ani": 80.0798, "matched_fragments": 656, "total_fragments": 1244, "ani_threshold": 95, "status": 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