{ "type": "genome", "identifier": "GCF_900129405.1", "organism": "Flavobacterium fontis", "title": "Flavobacterium fontis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900129405.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444377", "wgs_master": "FQVQ00000000.1", "refseq_category": "reference genome", "taxid": "1124188", "species_taxid": "1124188", "organism_name": "Flavobacterium fontis", "infraspecific_name": "strain=DSM 25660", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2695420946 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900129405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/405/GCF_900129405.1_IMG-taxon_2695420946_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3084632", "genome_size_ungapped": "3084632", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900129405.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "2757", "protein_coding_gene_count": "2697", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium fontis" ], "sample_taxid": [ "1124188" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.871 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3084632", "Number of Sequences": "36", "Longest Sequences (bp)": "512507", "N50 (bp)": "173414", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.0", "Number of CDSs": "2679", "Average Protein Length": "337.8", "Coding Ratio (%)": "88.0", "Number of rRNAs": "2", "Number of tRNAs": "39", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium fontis", "strain": "strain=DSM 25660", "accession": "GCA_900129405.1", "taxid": 1124188, "species_taxid": 1124188, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1008, "total_fragments": 1010, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium stagni", "strain": "strain=WWJ-16", "accession": "GCA_004122105.1", "taxid": 2506421, "species_taxid": 2506421, "relation_to_type": "type", "validated": true, "ani": 82.0454, "matched_fragments": 533, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=LMG 25203", "accession": "GCA_014385475.2", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 78.0916, "matched_fragments": 160, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=an-8", "accession": "GCA_014486675.1", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 78.0529, "matched_fragments": 160, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.9385, "matched_fragments": 121, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lutivivi", "strain": "strain=CGMCC 1.15347", "accession": "GCA_014642275.1", "taxid": 1677894, "species_taxid": 1677894, "relation_to_type": "type", "validated": true, "ani": 77.9372, "matched_fragments": 149, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aciduliphilum", "strain": "strain=DSM 25663", "accession": "GCA_003268855.1", "taxid": 1101402, "species_taxid": 1101402, "relation_to_type": "type", "validated": true, "ani": 77.2734, "matched_fragments": 151, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium silvisoli", "strain": "strain=RD-2-33", "accession": "GCA_004329815.1", "taxid": 2529433, "species_taxid": 2529433, "relation_to_type": "type", "validated": true, "ani": 77.2411, "matched_fragments": 168, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium phycosphaerae", "strain": "strain=MK012", "accession": "GCA_010119235.1", "taxid": 2697515, "species_taxid": 2697515, "relation_to_type": "type", "validated": true, "ani": 77.2053, "matched_fragments": 175, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquaticum", "strain": "strain=CGMCC 1.12398", "accession": "GCA_003259835.1", "taxid": 1236486, "species_taxid": 1236486, "relation_to_type": "type", "validated": true, "ani": 77.147, "matched_fragments": 117, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium dankookense", "strain": "strain=DSM 25687", "accession": "GCA_004362665.1", "taxid": 706186, "species_taxid": 706186, "relation_to_type": "type", "validated": true, "ani": 77.1216, "matched_fragments": 159, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sufflavum", "strain": "strain=BBQ-12", "accession": "GCA_004016525.1", "taxid": 1921138, "species_taxid": 1921138, "relation_to_type": "type", "validated": true, "ani": 77.0422, "matched_fragments": 85, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 77.0392, "matched_fragments": 117, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 76.9966, "matched_fragments": 97, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 76.9363, "matched_fragments": 105, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sangjuense", "strain": "strain=GS03", "accession": "GCA_004797125.1", "taxid": 2518177, "species_taxid": 2518177, "relation_to_type": "type", "validated": true, "ani": 76.8026, "matched_fragments": 130, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alvei", "strain": "strain=HR-AY", "accession": "GCA_002920895.1", "taxid": 2080416, "species_taxid": 2080416, "relation_to_type": "type", "validated": true, "ani": 76.7588, "matched_fragments": 103, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 76.668, "matched_fragments": 98, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 76.6015, "matched_fragments": 88, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 76.5827, "matched_fragments": 95, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium caeni", "strain": "strain=CGMCC 1.7031", "accession": "GCA_900101895.1", "taxid": 490189, "species_taxid": 490189, "relation_to_type": "type", "validated": true, "ani": 76.2273, "matched_fragments": 67, "total_fragments": 1010, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900129405.1", "gtdb_species": "s__Flavobacterium fontis", "ani": 100.0, "matched_fragments": 1009, "total_fragments": 1010, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "fontis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }