{ "type": "genome", "identifier": "GCF_900129435.1", "organism": "Hoylesella oralis", "title": "Hoylesella oralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900129435.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444288", "wgs_master": "FQVS00000000.1", "refseq_category": "na", "taxid": "28134", "species_taxid": "28134", "organism_name": "Hoylesella oralis", "infraspecific_name": "strain=DSM 20702", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2695421016 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900129435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/435/GCF_900129435.1_IMG-taxon_2695421016_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2812609", "genome_size_ungapped": "2812609", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900129435.1-RS_2024_03_12", "annotation_date": "2024-03-12", "total_gene_count": "2314", "protein_coding_gene_count": "2222", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Hoylesella oralis" ], "sample_taxid": [ "28134" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.801 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2812609", "Number of Sequences": "17", "Longest Sequences (bp)": "854867", "N50 (bp)": "343661", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.5", "Number of CDSs": "2216", "Average Protein Length": "367.8", "Coding Ratio (%)": "86.9", "Number of rRNAs": "2", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella oralis", "strain": "strain=DSM 20702", "accession": "GCA_900129435.1", "taxid": 28134, "species_taxid": 28134, 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78.7735, "matched_fragments": 56, "total_fragments": 927, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.00", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001553265.1", "gtdb_species": "s__Prevotella sp001553265", "ani": 78.3434, "matched_fragments": 73, "total_fragments": 927, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "99.33", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900637655.1", "gtdb_species": "s__Prevotella oris", "ani": 78.1414, "matched_fragments": 85, "total_fragments": 927, 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