{ "type": "genome", "identifier": "GCF_900129465.1", "organism": "Chitinophaga niabensis", "title": "Chitinophaga niabensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900129465.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488055", "wgs_master": "FSRA00000000.1", "refseq_category": "reference genome", "taxid": "536979", "species_taxid": "536979", "organism_name": "Chitinophaga niabensis", "infraspecific_name": "strain=DSM 24787", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/16", "asm_name": "IMG-taxon 2636416022 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900129465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/465/GCF_900129465.1_IMG-taxon_2636416022_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7130081", "genome_size_ungapped": "7126586", "gc_percent": "46.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900129465.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "5824", "protein_coding_gene_count": "5756", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-16", "dateModified": "2016-12-16", "datePublished": "2016-12-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophaga niabensis" ], "sample_taxid": [ "536979" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.016 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7130081", "Number of Sequences": "6", "Longest Sequences (bp)": "4224143", "N50 (bp)": "4224143", "Gap Ratio (%)": "0.049018", "GCcontent (%)": "46.0", "Number of CDSs": "5734", "Average Protein Length": "377.9", "Coding Ratio (%)": "91.2", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinophaga niabensis", "strain": "strain=DSM 24787", "accession": "GCA_900129465.1", "taxid": 536979, 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"total_fragments": 2375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga deserti", "strain": "strain=XJ-2", "accession": "GCA_003149455.1", "taxid": 2164099, "species_taxid": 2164099, "relation_to_type": "type", "validated": true, "ani": 77.7803, "matched_fragments": 495, "total_fragments": 2375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga oryzae", "strain": "strain=1303", "accession": "GCA_012516375.2", "taxid": 2725414, "species_taxid": 2725414, "relation_to_type": "type", "validated": true, "ani": 77.1911, "matched_fragments": 275, "total_fragments": 2375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga filiformis", "strain": "strain=DSM 527", "accession": "GCA_900102545.1", "taxid": 104663, "species_taxid": 104663, "relation_to_type": "type", "validated": true, "ani": 76.9842, "matched_fragments": 273, "total_fragments": 2375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga arvensicola", "strain": "strain=DSM 3695", "accession": "GCA_900110835.1", "taxid": 29529, "species_taxid": 29529, "relation_to_type": "type", "validated": true, "ani": 76.9102, "matched_fragments": 322, "total_fragments": 2375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga agrisoli", "strain": "strain=BN140078", "accession": "GCA_008386695.1", "taxid": 2607653, "species_taxid": 2607653, "relation_to_type": "type", "validated": true, "ani": 76.8923, "matched_fragments": 332, "total_fragments": 2375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga ginsengisegetis", "strain": "strain=DSM 18108", "accession": "GCA_900168065.1", "taxid": 393003, "species_taxid": 393003, "relation_to_type": "type", "validated": true, "ani": 76.8816, "matched_fragments": 341, "total_fragments": 2375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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