{
    "type": "genome",
    "identifier": "GCF_900129495.1",
    "organism": "Geodermatophilus nigrescens",
    "title": "Geodermatophilus nigrescens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900129495.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05444351",
        "wgs_master": "FQVX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1070870",
        "species_taxid": "1070870",
        "organism_name": "Geodermatophilus nigrescens",
        "infraspecific_name": "strain=DSM 45408",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/12/03",
        "asm_name": "IMG-taxon 2695420953 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900129495.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/495/GCF_900129495.1_IMG-taxon_2695420953_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4740866",
        "genome_size_ungapped": "4740464",
        "gc_percent": "76.000000",
        "replicon_count": "0",
        "scaffold_count": "11",
        "contig_count": "11",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900129495.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "4635",
        "protein_coding_gene_count": "4557",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-12-03",
    "dateModified": "2016-12-03",
    "datePublished": "2016-12-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Geodermatophilus nigrescens"
        ],
        "sample_taxid": [
            "1070870"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.213 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4740866",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "1526345",
        "N50 (bp)": "1283662",
        "Gap Ratio (%)": "0.008479",
        "GCcontent (%)": "75.9",
        "Number of CDSs": "4604",
        "Average Protein Length": "318.0",
        "Coding Ratio (%)": "92.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Geodermatophilus nigrescens",
                "strain": "strain=DSM 45408",
                "accession": "GCA_900129495.1",
                "taxid": 1070870,
                "species_taxid": 1070870,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1572,
                "total_fragments": 1573,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Geodermatophilus aquaeductus",
                "strain": "strain=DSM 46834",
                "accession": "GCA_900182545.1",
                "taxid": 1564161,
                "species_taxid": 1564161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.3832,
                "matched_fragments": 1277,
                "total_fragments": 1573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus normandii",
                "strain": "strain=DSM 45417",
                "accession": "GCA_003182485.1",
                "taxid": 1137989,
                "species_taxid": 1137989,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1374,
                "matched_fragments": 1238,
                "total_fragments": 1573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus saharensis",
                "strain": "strain=DSM 45423",
                "accession": "GCA_900188205.1",
                "taxid": 1137994,
                "species_taxid": 1137994,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1362,
                "matched_fragments": 1204,
                "total_fragments": 1573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus amargosae",
                "strain": "strain=DSM 46136",
                "accession": "GCA_900116515.1",
                "taxid": 1296565,
                "species_taxid": 1296565,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9335,
                "matched_fragments": 1248,
                "total_fragments": 1573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus tzadiensis",
                "strain": "strain=DSM 45416",
                "accession": "GCA_003002915.1",
                "taxid": 1137988,
                "species_taxid": 1137988,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.688,
                "matched_fragments": 1154,
                "total_fragments": 1573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus telluris",
                "strain": "strain=DSM 45421",
                "accession": "GCA_900102745.1",
                "taxid": 1190417,
                "species_taxid": 1190417,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.5371,
                "matched_fragments": 1163,
                "total_fragments": 1573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geodermatophilus bullaregiensis",
                "strain": "strain=DSM 46841",
                "accession": "GCA_016907675.1",
                "taxid": 1564160,
                "species_taxid": 1564160,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.0211,
                "matched_fragments": 1179,
                "total_fragments": 1573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klenkia taihuensis",
                "strain": "strain=CGMCC 1.12303",
                "accession": "GCA_014653095.1",
                "taxid": 1225127,
                "species_taxid": 1225127,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2183,
                "matched_fragments": 947,
                "total_fragments": 1573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klenkia brasiliensis",
                "strain": "strain=DSM 44526",
                "accession": "GCA_900100695.1",
                "taxid": 333142,
                "species_taxid": 333142,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1427,
                "matched_fragments": 922,
                "total_fragments": 1573,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klenkia taihuensis",
                "strain": "strain=DSM 45962",
                "accession": "GCA_900112525.1",
                "taxid": 1225127,
                "species_taxid": 1225127,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1182,
                "matched_fragments": 944,
                "total_fragments": 1573,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900129495.1",
                "gtdb_species": "s__Geodermatophilus nigrescens",
                "ani": 100.0,
                "matched_fragments": 1572,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900182545.1",
                "gtdb_species": "s__Geodermatophilus aquaeductus",
                "ani": 88.3424,
                "matched_fragments": 1281,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.01",
                "min_intra_species_ani": "96.01",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900188205.1",
                "gtdb_species": "s__Geodermatophilus saharensis",
                "ani": 88.1638,
                "matched_fragments": 1202,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003182485.1",
                "gtdb_species": "s__Geodermatophilus normandii",
                "ani": 88.0738,
                "matched_fragments": 1244,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900115395.1",
                "gtdb_species": "s__Geodermatophilus obscurus_B",
                "ani": 88.0592,
                "matched_fragments": 1231,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116515.1",
                "gtdb_species": "s__Geodermatophilus amargosae",
                "ani": 87.923,
                "matched_fragments": 1249,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.87",
                "min_intra_species_ani": "95.87",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003002915.1",
                "gtdb_species": "s__Geodermatophilus tzadiensis",
                "ani": 87.7003,
                "matched_fragments": 1153,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900102745.1",
                "gtdb_species": "s__Geodermatophilus telluris",
                "ani": 87.5801,
                "matched_fragments": 1159,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900115505.1",
                "gtdb_species": "s__Geodermatophilus dictyosporus",
                "ani": 87.3682,
                "matched_fragments": 1173,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016907675.1",
                "gtdb_species": "s__Geodermatophilus bullaregiensis",
                "ani": 87.0363,
                "matched_fragments": 1177,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Geodermatophilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004571075.1",
                "gtdb_species": "s__Blastococcus sp004571075",
                "ani": 83.5619,
                "matched_fragments": 918,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Blastococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900112525.1",
                "gtdb_species": "s__Klenkia taihuensis",
                "ani": 82.1537,
                "matched_fragments": 938,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Klenkia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900100695.1",
                "gtdb_species": "s__Klenkia brasiliensis",
                "ani": 82.124,
                "matched_fragments": 924,
                "total_fragments": 1573,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Klenkia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.034,
        "cell_length": 0.07,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 29.285,
        "optimum_ph": 7.062,
        "genome_size": 4740866.0,
        "gc_content": 74.0,
        "coding_genes": 4798.5,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 47.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.6,
        "coccus_cell_shape": 0.4,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Geodermatophilus",
        "nigrescens"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}