{ "type": "genome", "identifier": "GCF_900129535.1", "organism": "Prevotella scopos JCM 17725", "title": "Prevotella scopos JCM 17725", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900129535.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444364", "wgs_master": "FQWA00000000.1", "refseq_category": "na", "taxid": "1236518", "species_taxid": "589437", "organism_name": "Prevotella scopos JCM 17725", "infraspecific_name": "strain=DSM 22613", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2695420955 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900129535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/535/GCF_900129535.1_IMG-taxon_2695420955_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3209893", "genome_size_ungapped": "3209428", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900129535.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2558", "protein_coding_gene_count": "2432", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella scopos JCM 17725" ], "sample_taxid": [ "1236518" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.915 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3209893", "Number of Sequences": "82", "Longest Sequences (bp)": "221244", "N50 (bp)": "67814", "Gap Ratio (%)": "0.014486", "GCcontent (%)": "40.7", "Number of CDSs": "2496", "Average Protein Length": "348.7", "Coding Ratio (%)": "81.3", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella scopos", "strain": "strain=DSM 22613", "accession": "GCA_900129535.1", 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"min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000257925.1", "gtdb_species": "s__Prevotella sp000257925", "ani": 81.8599, "matched_fragments": 389, "total_fragments": 1032, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "96.99", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 10, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.226, "cell_length": 0.114, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 35.219, "optimum_ph": 7.109, "genome_size": 3232687.667, "gc_content": 45.137, "coding_genes": 2508.172, "rRNA16S_genes": 4.0, "tRNA_genes": 50.875, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, 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