{ "type": "genome", "identifier": "GCF_900129555.1", "organism": "Flavobacterium defluvii", "title": "Flavobacterium defluvii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900129555.1", "bioproject": "PRJNA224116", "biosample": "SAMN05443663", "wgs_master": "FQWC00000000.1", "refseq_category": "reference genome", "taxid": "370979", "species_taxid": "370979", "organism_name": "Flavobacterium defluvii", "infraspecific_name": "strain=DSM 17963", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2695420958 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900129555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/555/GCF_900129555.1_IMG-taxon_2695420958_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4871623", "genome_size_ungapped": "4870818", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900129555.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4223", "protein_coding_gene_count": "4144", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium defluvii" ], "sample_taxid": [ "370979" ], 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84.3494, "matched_fragments": 1214, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium denitrificans", "strain": "strain=DSM 15936", "accession": "GCA_000425445.1", "taxid": 281361, "species_taxid": 281361, "relation_to_type": "type", "validated": true, "ani": 83.7623, "matched_fragments": 1014, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nitrogenifigens", "strain": "strain=NXU-44", "accession": "GCA_003254565.1", "taxid": 1617283, "species_taxid": 1617283, "relation_to_type": "type", "validated": true, "ani": 83.7356, "matched_fragments": 1063, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium crocinum", "strain": "strain=HYN0056", "accession": "GCA_003122385.1", "taxid": 2183896, "species_taxid": 2183896, "relation_to_type": "type", "validated": true, "ani": 83.7305, "matched_fragments": 1091, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium zhairuonense", "strain": "strain=A5.7", "accession": "GCA_004352915.1", "taxid": 2493631, "species_taxid": 2493631, "relation_to_type": "type", "validated": true, "ani": 83.7212, "matched_fragments": 1097, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium phragmitis", "strain": "strain=CGMCC 1.10370", "accession": "GCA_900112575.1", "taxid": 739143, "species_taxid": 739143, "relation_to_type": "type", "validated": true, "ani": 83.7093, "matched_fragments": 1102, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 83.6568, "matched_fragments": 1065, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluviale", "strain": "strain=HYN0086", "accession": "GCA_003312915.1", "taxid": 2249356, "species_taxid": 2249356, "relation_to_type": "type", "validated": true, "ani": 83.4234, "matched_fragments": 1054, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 83.3782, "matched_fragments": 1050, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 78.0202, "matched_fragments": 210, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900129555.1", "gtdb_species": "s__Flavobacterium defluvii", "ani": 100.0, "matched_fragments": 1612, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002210235.1", "gtdb_species": "s__Flavobacterium sp002210235", "ani": 87.4399, "matched_fragments": 1374, "total_fragments": 1612, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "96.54", "mean_intra_species_af": 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