{ "type": "genome", "identifier": "GCF_900129585.1", "organism": "Flavobacterium micromati", "title": "Flavobacterium micromati", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900129585.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444372", "wgs_master": "FQWF00000000.1", "refseq_category": "reference genome", "taxid": "229205", "species_taxid": "229205", "organism_name": "Flavobacterium micromati", "infraspecific_name": "strain=DSM 17659", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2695420959 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900129585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/585/GCF_900129585.1_IMG-taxon_2695420959_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3692790", "genome_size_ungapped": "3692731", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900129585.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "3211", "protein_coding_gene_count": "3127", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium micromati" ], "sample_taxid": [ "229205" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.026 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3692790", "Number of Sequences": "40", "Longest Sequences (bp)": "495863", "N50 (bp)": "214813", "Gap Ratio (%)": "0.001598", "GCcontent (%)": "33.1", "Number of CDSs": "3119", "Average Protein Length": "329.1", "Coding Ratio (%)": "83.4", "Number of rRNAs": "2", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium micromati", "strain": "strain=DSM 17659", "accession": "GCA_900129585.1", 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true, "ani": 80.2338, "matched_fragments": 595, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium weaverense", "strain": "strain=DSM 19727", "accession": "GCA_003688495.1", "taxid": 271156, "species_taxid": 271156, "relation_to_type": "type", "validated": true, "ani": 80.1135, "matched_fragments": 561, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 80.0763, "matched_fragments": 583, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium omnivorum", "strain": "strain=CGMCC 1.2747", "accession": "GCA_900099915.1", "taxid": 178355, "species_taxid": 178355, "relation_to_type": "type", "validated": true, "ani": 80.0733, "matched_fragments": 610, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 79.8917, "matched_fragments": 538, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xueshanense", "strain": "strain=CGMCC 1.9227", "accession": "GCA_900112975.1", "taxid": 935223, "species_taxid": 935223, "relation_to_type": "type", "validated": true, "ani": 79.8565, "matched_fragments": 556, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 79.8521, "matched_fragments": 577, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bomense", "strain": "strain=RB1N8", "accession": "GCA_003970355.1", "taxid": 2497483, "species_taxid": 2497483, "relation_to_type": "type", "validated": true, "ani": 79.4088, "matched_fragments": 523, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium urumqiense", "strain": "strain=CGMCC 1.9230", "accession": "GCA_900108015.1", "taxid": 935224, "species_taxid": 935224, "relation_to_type": "type", "validated": true, "ani": 79.3635, "matched_fragments": 502, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium muglaense", "strain": "strain=F-60", "accession": "GCA_014305155.1", "taxid": 2764716, "species_taxid": 2764716, "relation_to_type": "type", "validated": true, "ani": 78.7172, "matched_fragments": 409, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.377, "matched_fragments": 334, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.0719, "matched_fragments": 309, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 78.0309, "matched_fragments": 290, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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