{
    "type": "genome",
    "identifier": "GCF_900129655.1",
    "organism": "Bacteroides clarus YIT 12056",
    "title": "Bacteroides clarus YIT 12056",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900129655.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05444376",
        "wgs_master": "FQWK00000000.1",
        "refseq_category": "na",
        "taxid": "762984",
        "species_taxid": "626929",
        "organism_name": "Bacteroides clarus YIT 12056",
        "infraspecific_name": "strain=YIT 12056",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/12/03",
        "asm_name": "IMG-taxon 2695420967 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900129655.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/655/GCF_900129655.1_IMG-taxon_2695420967_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3748808",
        "genome_size_ungapped": "3748808",
        "gc_percent": "45.500000",
        "replicon_count": "0",
        "scaffold_count": "18",
        "contig_count": "18",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900129655.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3086",
        "protein_coding_gene_count": "2990",
        "non_coding_gene_count": "69",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-12-03",
    "dateModified": "2016-12-03",
    "datePublished": "2016-12-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroides clarus YIT 12056"
        ],
        "sample_taxid": [
            "762984"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.067 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3748808",
        "Number of Sequences": "18",
        "Longest Sequences (bp)": "607012",
        "N50 (bp)": "544067",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.4",
        "Number of CDSs": "2991",
        "Average Protein Length": "374.9",
        "Coding Ratio (%)": "89.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Bacteroides clarus",
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                "species_taxid": 626929,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1241,
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            {
                "organism_name": "Bacteroides clarus",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bacteroides stercoris",
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                "species_taxid": 46506,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides stercoris",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides propionicigenes",
                "strain": "strain=NSJ-90",
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                "taxid": 2834112,
                "species_taxid": 2834112,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 832,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides eggerthii",
                "strain": "strain=DSM 20697",
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                "species_taxid": 28111,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides eggerthii",
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            {
                "organism_name": "Bacteroides eggerthii",
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                "organism_name": "Bacteroides gallinarum",
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                "species_taxid": 376806,
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                "status": "below_threshold"
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            {
                "organism_name": "Bacteroides gallinarum",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides humanifaecis",
                "strain": "strain=KGMB07931",
                "accession": "GCA_017309675.2",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides uniformis",
                "strain": "strain=ATCC 8492",
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                "species_taxid": 820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2465,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_900129655.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.302,
        "cell_length": -0.155,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "clarus",
        "YIT",
        "12056"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}