{ "type": "genome", "identifier": "GCF_900129665.1", "organism": "Flagellimonas flava", "title": "Flagellimonas flava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900129665.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488116", "wgs_master": "FQWL00000000.1", "refseq_category": "reference genome", "taxid": "570519", "species_taxid": "570519", "organism_name": "Flagellimonas flava", "infraspecific_name": "strain=DSM 22638", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2617270824 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900129665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/665/GCF_900129665.1_IMG-taxon_2617270824_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3836163", "genome_size_ungapped": "3836163", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-03", "total_gene_count": "3526", "protein_coding_gene_count": "3467", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Flagellimonas flava" ], "sample_taxid": [ "570519" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.090 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3836163", "Number of Sequences": "14", "Longest Sequences (bp)": "1270456", "N50 (bp)": "843889", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.0", "Number of CDSs": "3436", "Average Protein Length": "338.9", "Coding Ratio (%)": "91.1", "Number of rRNAs": "6", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Muricauda flava", "strain": "strain=DSM 22638", "accession": "GCA_900129665.1", "taxid": 570519, "species_taxid": 570519, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1271, "total_fragments": 1271, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Muricauda algicola", "strain": "strain=AsT0115", "accession": "GCA_005937185.1", "taxid": 2583815, "species_taxid": 2583815, "relation_to_type": "type", "validated": true, "ani": 79.081, "matched_fragments": 523, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda parva", "strain": "strain=DSM 25885", "accession": "GCA_900215465.1", "taxid": 1247520, "species_taxid": 1247520, "relation_to_type": "type", "validated": true, "ani": 78.4329, "matched_fragments": 380, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda onchidii", "strain": "strain=XY-359", "accession": "GCA_004804315.1", "taxid": 2562684, "species_taxid": 2562684, "relation_to_type": "type", "validated": true, "ani": 78.3885, "matched_fragments": 349, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda olearia", "strain": "strain=CL-SS4", "accession": "GCA_009184425.1", "taxid": 552546, "species_taxid": 552546, "relation_to_type": "type", "validated": true, "ani": 78.0867, "matched_fragments": 299, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda nanhaiensis", "strain": "strain=SM1704", "accession": "GCA_003382275.1", "taxid": 2292706, "species_taxid": 2292706, "relation_to_type": "type", "validated": true, "ani": 78.0533, "matched_fragments": 329, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda oceanensis", "strain": "strain=40DY170", "accession": "GCA_003992595.1", "taxid": 2499163, "species_taxid": 2499163, "relation_to_type": "type", "validated": true, "ani": 77.9756, "matched_fragments": 235, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aurantiaca", "strain": "strain=HME9304", "accession": "GCA_003269425.1", "taxid": 1383885, "species_taxid": 1383885, "relation_to_type": "type", "validated": true, "ani": 77.9252, "matched_fragments": 257, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda amphidinii", "strain": "strain=LMIT004", "accession": "GCA_013090115.1", "taxid": 2735167, "species_taxid": 2735167, "relation_to_type": "type", "validated": true, "ani": 77.8658, "matched_fragments": 349, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aequoris", "strain": "strain=NH166", "accession": "GCA_008017345.1", "taxid": 2306997, "species_taxid": 2306997, "relation_to_type": "type", "validated": true, "ani": 77.8372, "matched_fragments": 265, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda aequoris", "strain": "strain=NH166", "accession": "GCA_003584165.1", "taxid": 2306997, "species_taxid": 2306997, "relation_to_type": "type", "validated": true, "ani": 77.833, "matched_fragments": 266, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda antarctica", "strain": "strain=CGMCC 1.12174", "accession": "GCA_900142405.1", "taxid": 1055723, "species_taxid": 1055723, "relation_to_type": "type", "validated": true, "ani": 77.7679, "matched_fragments": 239, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda alvinocaridis", "strain": "strain=SCR12", "accession": "GCA_004916895.1", "taxid": 2530200, "species_taxid": 2530200, "relation_to_type": "type", "validated": true, "ani": 77.752, "matched_fragments": 295, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda ruestringensis", "strain": "strain=DSM 13258", "accession": "GCA_000224085.1", "taxid": 111501, "species_taxid": 111501, "relation_to_type": "type", "validated": true, "ani": 77.7349, "matched_fragments": 256, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda sediminis", "strain": "strain=40Bstr401", "accession": "GCA_010500845.1", "taxid": 2696468, "species_taxid": 2696468, "relation_to_type": "type", "validated": true, "ani": 77.5957, "matched_fragments": 243, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda profundi", "strain": "strain=BC31-3-A3", "accession": "GCA_017313275.1", "taxid": 2915620, "species_taxid": 2915620, "relation_to_type": "type", "validated": true, "ani": 77.3389, "matched_fragments": 256, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900129665.1", "gtdb_species": "s__Muricauda flava", "ani": 100.0, "matched_fragments": 1271, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_005937185.1", "gtdb_species": "s__Muricauda algicola", "ani": 79.081, "matched_fragments": 523, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900215465.1", "gtdb_species": "s__Muricauda pacifica_A", "ani": 78.4329, "matched_fragments": 380, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004804315.1", "gtdb_species": "s__Muricauda sp004804315", "ani": 78.3994, "matched_fragments": 348, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014698935.1", "gtdb_species": "s__Muricauda sp014698935", "ani": 78.2224, "matched_fragments": 387, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009184425.1", "gtdb_species": "s__Muricauda olearia", "ani": 78.0982, "matched_fragments": 298, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "96.52", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000745185.1", "gtdb_species": "s__Muricauda sp000745185", "ani": 78.0706, "matched_fragments": 309, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003382275.1", "gtdb_species": "s__Muricauda nanhaiensis", "ani": 78.0533, "matched_fragments": 329, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010993855.1", "gtdb_species": "s__Muricauda sp010993855", "ani": 78.0283, "matched_fragments": 374, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003385855.1", "gtdb_species": "s__Muricauda sp003385855", "ani": 77.9922, "matched_fragments": 295, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.98", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003992595.1", "gtdb_species": "s__Muricauda sp002452975", "ani": 77.9899, "matched_fragments": 234, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "99.01", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008040165.1", "gtdb_species": "s__Muricauda hymeniacidonis", "ani": 77.9627, "matched_fragments": 413, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013090115.1", "gtdb_species": "s__Muricauda amphidinii", "ani": 77.8658, "matched_fragments": 349, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001683915.1", "gtdb_species": "s__Muricauda sp001683915", "ani": 77.86, "matched_fragments": 324, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.66", "min_intra_species_ani": "99.66", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003584165.1", "gtdb_species": "s__Muricauda sp003584165", "ani": 77.8453, "matched_fragments": 265, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002699205.1", "gtdb_species": "s__Muricauda sp002699205", "ani": 77.7904, "matched_fragments": 195, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002813125.1", "gtdb_species": "s__Muricauda sp002813125", "ani": 77.7808, "matched_fragments": 233, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004916895.1", "gtdb_species": "s__Muricauda alvinocaridis", "ani": 77.752, "matched_fragments": 295, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010500845.1", "gtdb_species": "s__Muricauda sediminis", "ani": 77.5957, "matched_fragments": 243, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017313275.1", "gtdb_species": "s__Muricauda lutimaris_A", "ani": 77.3611, "matched_fragments": 254, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Muricauda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.553, "cell_length": 0.23, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 27.5, "optimum_ph": 8.0, "genome_size": 4132279.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flagellimonas", "flava" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }