{ "type": "genome", "identifier": "GCF_900129775.1", "organism": "Halobaculum gomorrense", "title": "Halobaculum gomorrense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900129775.1", "bioproject": "PRJNA224116", "biosample": "SAMN05443636", "wgs_master": "FQWV00000000.1", "refseq_category": "reference genome", "taxid": "43928", "species_taxid": "43928", "organism_name": "Halobaculum gomorrense", "infraspecific_name": "strain=DSM 9297", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2695420988 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900129775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/775/GCF_900129775.1_IMG-taxon_2695420988_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3208246", "genome_size_ungapped": "3207756", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900129775.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3273", "protein_coding_gene_count": "3165", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Halobaculum gomorrense" ], "sample_taxid": [ "43928" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Israel:Dead Sea, Israel" ], "sample_host_location_id": [], "data_size": "0.866 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3208246", "Number of Sequences": "16", "Longest Sequences (bp)": "703175", "N50 (bp)": "450886", "Gap Ratio (%)": "0.015273", "GCcontent (%)": "68.6", "Number of CDSs": "3219", "Average Protein Length": "291.7", "Coding Ratio (%)": "87.8", "Number of rRNAs": "2", "Number of tRNAs": "44", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halobaculum gomorrense", "strain": "strain=DSM 9297", "accession": "GCA_900129775.1", "taxid": 43928, "species_taxid": 43928, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1057, "total_fragments": 1060, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halobaculum roseum", "strain": "strain=CGMCC 1.15501", "accession": "GCA_019880245.1", "taxid": 2175149, "species_taxid": 2175149, "relation_to_type": "type", "validated": true, "ani": 87.8807, "matched_fragments": 818, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobaculum magnesiiphilum", "strain": "strain=NBRC 109044", "accession": "GCA_019823105.1", "taxid": 1017351, "species_taxid": 1017351, "relation_to_type": "type", "validated": true, "ani": 87.8738, "matched_fragments": 822, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobaculum rubrum", "strain": "strain=C46", "accession": "GCA_019880225.1", "taxid": 2872158, "species_taxid": 2872158, 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