{
    "type": "genome",
    "identifier": "GCF_900129815.1",
    "organism": "Asaccharospora irregularis DSM 2635",
    "title": "Asaccharospora irregularis DSM 2635",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900129815.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04488530",
        "wgs_master": "FQWX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121321",
        "species_taxid": "29359",
        "organism_name": "Asaccharospora irregularis DSM 2635",
        "infraspecific_name": "strain=DSM 2635",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/12/03",
        "asm_name": "IMG-taxon 2634166349 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900129815.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/815/GCF_900129815.1_IMG-taxon_2634166349_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2622699",
        "genome_size_ungapped": "2617864",
        "gc_percent": "30.500000",
        "replicon_count": "0",
        "scaffold_count": "76",
        "contig_count": "76",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900129815.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "2595",
        "protein_coding_gene_count": "2492",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-12-03",
    "dateModified": "2016-12-03",
    "datePublished": "2016-12-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Asaccharospora irregularis DSM 2635"
        ],
        "sample_taxid": [
            "1121321"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.723 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2622699",
        "Number of Sequences": "76",
        "Longest Sequences (bp)": "213682",
        "N50 (bp)": "70992",
        "Gap Ratio (%)": "0.184352",
        "GCcontent (%)": "30.3",
        "Number of CDSs": "2496",
        "Average Protein Length": "296.3",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Clostridioides difficile",
                "strain": "strain=DSM 1296",
                "accession": "GCA_000438845.1",
                "taxid": 1496,
                "species_taxid": 1496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0281,
                "matched_fragments": 295,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridioides difficile",
                "strain": "strain=FDAARGOS_1525",
                "accession": "GCA_020341515.1",
                "taxid": 1496,
                "species_taxid": 1496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0215,
                "matched_fragments": 305,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia ilealis",
                "strain": "strain=CRIB",
                "accession": "GCA_900015215.1",
                "taxid": 1115758,
                "species_taxid": 1115758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9857,
                "matched_fragments": 271,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia hominis",
                "strain": "strain=FRIFI",
                "accession": "GCA_900002575.1",
                "taxid": 1507512,
                "species_taxid": 1507512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8732,
                "matched_fragments": 281,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia lituseburensis",
                "strain": "strain=A25K",
                "accession": "GCA_900002825.1",
                "taxid": 1537,
                "species_taxid": 1537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.87,
                "matched_fragments": 315,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia timonensis",
                "strain": "strain=Marseille-P326",
                "accession": "GCA_900106845.1",
                "taxid": 1776391,
                "species_taxid": 1776391,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8612,
                "matched_fragments": 276,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridioides difficile",
                "strain": "strain=ATCC 9689",
                "accession": "GCA_000376285.1",
                "taxid": 1496,
                "species_taxid": 1496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8133,
                "matched_fragments": 303,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia weinsteinii",
                "strain": "strain=CCRI-19649",
                "accession": "GCA_002250835.2",
                "taxid": 2020949,
                "species_taxid": 2020949,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7894,
                "matched_fragments": 290,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia lituseburensis",
                "strain": "strain=DSM 797",
                "accession": "GCA_900103615.1",
                "taxid": 1537,
                "species_taxid": 1537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6905,
                "matched_fragments": 313,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] dakarense",
                "strain": "strain=FF1",
                "accession": "GCA_000499525.1",
                "taxid": 1301100,
                "species_taxid": 1301100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6596,
                "matched_fragments": 328,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraclostridium dentum",
                "strain": "strain=SKVG24",
                "accession": "GCA_012922555.1",
                "taxid": 2662455,
                "species_taxid": 2662455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3582,
                "matched_fragments": 249,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paeniclostridium sordellii",
                "strain": "strain=ATCC9714",
                "accession": "GCA_000953675.1",
                "taxid": 1505,
                "species_taxid": 1505,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3425,
                "matched_fragments": 268,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraclostridium bifermentans subsp. muricolitidis",
                "strain": "strain=PAGU 1678",
                "accession": "GCA_019650315.1",
                "taxid": 2663173,
                "species_taxid": 1490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1589,
                "matched_fragments": 250,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinibacter bartlettii",
                "strain": "strain=DSM 16795",
                "accession": "GCA_000154445.1",
                "taxid": 261299,
                "species_taxid": 261299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7109,
                "matched_fragments": 187,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinibacter bartlettii",
                "strain": "strain=DSM 16795",
                "accession": "GCA_025148965.1",
                "taxid": 261299,
                "species_taxid": 261299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6775,
                "matched_fragments": 187,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Intestinibacter bartlettii",
                "strain": "strain=DSM 16795",
                "accession": "GCA_900167285.1",
                "taxid": 261299,
                "species_taxid": 261299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5098,
                "matched_fragments": 184,
                "total_fragments": 838,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900129815.1",
                "gtdb_species": "s__Asaccharospora irregularis",
                "ani": 100.0,
                "matched_fragments": 835,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Asaccharospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002251085.2",
                "gtdb_species": "s__Romboutsia_B maritimum",
                "ani": 79.3412,
                "matched_fragments": 328,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001077535.1",
                "gtdb_species": "s__Clostridioides difficile",
                "ani": 79.0247,
                "matched_fragments": 303,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "95.94",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2225,
                "status": "-"
            },
            {
                "accession": "GCF_900015215.1",
                "gtdb_species": "s__Romboutsia ilealis",
                "ani": 78.9652,
                "matched_fragments": 273,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.59",
                "min_intra_species_ani": "98.59",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001299635.1",
                "gtdb_species": "s__Clostridioides difficile_A",
                "ani": 78.9627,
                "matched_fragments": 278,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "95.22",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_900243075.1",
                "gtdb_species": "s__Clostridioides difficile_D",
                "ani": 78.9582,
                "matched_fragments": 293,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000449425.2",
                "gtdb_species": "s__Clostridioides difficile_E",
                "ani": 78.8513,
                "matched_fragments": 295,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_904418825.1",
                "gtdb_species": "s__Romboutsia sp904418825",
                "ani": 78.8349,
                "matched_fragments": 229,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.17",
                "min_intra_species_ani": "99.17",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900002575.1",
                "gtdb_species": "s__Romboutsia_C hominis",
                "ani": 78.834,
                "matched_fragments": 282,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "95.25",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_017590215.1",
                "gtdb_species": "s__CCUG-7971 sp017590215",
                "ani": 78.8251,
                "matched_fragments": 324,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__CCUG-7971",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900106845.1",
                "gtdb_species": "s__Romboutsia timonensis",
                "ani": 78.7897,
                "matched_fragments": 281,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "98.12",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_014323405.1",
                "gtdb_species": "s__GCA-900066495 sp014323405",
                "ani": 78.7607,
                "matched_fragments": 267,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__GCA-900066495",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002250835.2",
                "gtdb_species": "s__Romboutsia_A weinsteinii",
                "ani": 78.7466,
                "matched_fragments": 293,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902362365.1",
                "gtdb_species": "s__GCA-900066495 sp902362365",
                "ani": 78.7371,
                "matched_fragments": 276,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__GCA-900066495",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017425305.1",
                "gtdb_species": "s__Paraclostridium sp017425305",
                "ani": 78.6091,
                "matched_fragments": 122,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.54",
                "min_intra_species_ani": "97.54",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900604495.1",
                "gtdb_species": "s__GCA-900066495 sp900066495",
                "ani": 78.4133,
                "matched_fragments": 272,
                "total_fragments": 838,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__GCA-900066495",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.60",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.544,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2622699.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Asaccharospora",
        "irregularis",
        "DSM",
        "2635"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}