{ "type": "genome", "identifier": "GCF_900129845.1", "organism": "Cognatiyoonia sediminum", "title": "Cognatiyoonia sediminum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900129845.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444003", "wgs_master": "FQXB00000000.1", "refseq_category": "reference genome", "taxid": "1508389", "species_taxid": "1508389", "organism_name": "Cognatiyoonia sediminum", "infraspecific_name": "strain=DSM 28715", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2695421013 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900129845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/129/845/GCF_900129845.1_IMG-taxon_2695421013_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3257490", "genome_size_ungapped": "3257490", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900129845.1-RS_2024_04_11", "annotation_date": "2024-04-11", "total_gene_count": "3288", "protein_coding_gene_count": "3217", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Cognatiyoonia sediminum" ], "sample_taxid": [ "1508389" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.927 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3257490", "Number of Sequences": "16", "Longest Sequences (bp)": "1636816", "N50 (bp)": "1636816", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.4", "Number of CDSs": "3272", "Average Protein Length": "302.0", "Coding Ratio (%)": "91.0", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cognatiyoonia sediminum", "strain": "strain=DSM 28715", "accession": "GCA_900129845.1", 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95, "status": "below_threshold" }, { "organism_name": "Actibacterium pelagium", "strain": "strain=JN33", "accession": "GCA_002285415.1", "taxid": 2029103, "species_taxid": 2029103, "relation_to_type": "type", "validated": true, "ani": 76.9668, "matched_fragments": 137, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium pelagium", "strain": "strain=CGMCC 1.16012", "accession": "GCA_014644355.1", "taxid": 2029103, "species_taxid": 2029103, "relation_to_type": "type", "validated": true, "ani": 76.9383, "matched_fragments": 135, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivita boseongensis", "strain": "strain=BS-B2", "accession": "GCA_001262635.1", "taxid": 1470562, "species_taxid": 1470562, "relation_to_type": "type", "validated": true, "ani": 76.8701, "matched_fragments": 144, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=DSM 2781", "accession": "GCA_004345735.1", "taxid": 35804, "species_taxid": 35804, "relation_to_type": "type", "validated": true, "ani": 76.7457, "matched_fragments": 79, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sagittula marina", "strain": "strain=DSM 102235", "accession": "GCA_014196795.1", "taxid": 943940, "species_taxid": 943940, "relation_to_type": "type", "validated": true, "ani": 76.7062, "matched_fragments": 94, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria intermedia", "strain": "strain=DSM 29341", "accession": "GCA_900129345.1", "taxid": 996115, "species_taxid": 996115, "relation_to_type": "type", "validated": true, "ani": 76.645, "matched_fragments": 129, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Defluviimonas aquaemixtae", "strain": "strain=CECT 8626", "accession": "GCA_900302475.1", "taxid": 1542388, "species_taxid": 1542388, "relation_to_type": "type", "validated": true, "ani": 76.6141, "matched_fragments": 67, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita geojedonensis", "strain": "strain=DPG-138", "accession": "GCA_002115805.1", "taxid": 1123756, "species_taxid": 1123756, "relation_to_type": "type", "validated": true, "ani": 76.5215, "matched_fragments": 123, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax halotolerans", "strain": "strain=JCM 10271", "accession": "GCA_900115815.1", "taxid": 93684, "species_taxid": 93684, "relation_to_type": "type", "validated": true, "ani": 76.4697, "matched_fragments": 75, "total_fragments": 1079, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter straminiformis", "strain": "strain=CAM-8", "accession": "GCA_014243445.1", "taxid": 2045119, "species_taxid": 2045119, "relation_to_type": 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