{ "type": "genome", "identifier": "GCF_900130105.1", "organism": "Vibrio aerogenes CECT 7868", "title": "Vibrio aerogenes CECT 7868", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900130105.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4552037", "wgs_master": "FQXZ00000000.1", "refseq_category": "na", "taxid": "1216006", "species_taxid": "92172", "organism_name": "Vibrio aerogenes CECT 7868", "infraspecific_name": "strain=CECT 7868", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/12", "asm_name": "Vibrio.aerogenes_CECT 7868_Velvet_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900130105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/130/105/GCF_900130105.1_Vibrio.aerogenes_CECT_7868_Velvet_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5250260", "genome_size_ungapped": "5250260", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "77", "contig_count": "77", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900130105.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4676", "protein_coding_gene_count": "4477", "non_coding_gene_count": "105", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-12", "dateModified": "2016-12-12", "datePublished": "2016-12-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio aerogenes CECT 7868" ], "sample_taxid": [ "1216006" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.488 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5250260", "Number of Sequences": "77", "Longest Sequences (bp)": "405720", "N50 (bp)": "132421", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.7", "Number of CDSs": "4497", "Average Protein Length": "326.5", "Coding Ratio (%)": "83.9", "Number of rRNAs": "4", "Number of tRNAs": "80", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio aerogenes", "strain": "strain=CECT 7868", "accession": "GCA_900130105.1", "taxid": 92172, "species_taxid": 92172, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1703, "total_fragments": 1711, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio aerogenes", "strain": "strain=LMG 19650", "accession": "GCA_024346755.1", "taxid": 92172, "species_taxid": 92172, "relation_to_type": "type", "validated": true, "ani": 99.993, "matched_fragments": 1707, "total_fragments": 1711, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio quintilis", "strain": "", "accession": "GCA_900143745.1", "taxid": 1117707, "species_taxid": 1117707, "relation_to_type": "type", "validated": true, "ani": 83.4027, "matched_fragments": 1288, "total_fragments": 1711, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio quintilis", "strain": "strain=CECT 7734", "accession": "GCA_024529975.1", "taxid": 1117707, "species_taxid": 1117707, "relation_to_type": "type", "validated": true, "ani": 83.3646, "matched_fragments": 1313, "total_fragments": 1711, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio 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170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8665, "matched_fragments": 102, "total_fragments": 1711, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rhizosphaerae", "strain": "strain=DSM 18581", "accession": "GCA_000711805.1", "taxid": 398736, "species_taxid": 398736, "relation_to_type": "type", "validated": true, "ani": 77.8576, "matched_fragments": 295, "total_fragments": 1711, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio spartinae", "strain": "strain=CECT 9026", "accession": "GCA_024347135.1", "taxid": 1918945, "species_taxid": 1918945, "relation_to_type": "type", "validated": true, "ani": 77.8106, "matched_fragments": 283, "total_fragments": 1711, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rhizosphaerae", "strain": "strain=LMG 23790", "accession": "GCA_024347095.1", "taxid": 398736, "species_taxid": 398736, "relation_to_type": 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