{
    "type": "genome",
    "identifier": "GCF_900141815.1",
    "organism": "Rubritalea squalenifaciens DSM 18772",
    "title": "Rubritalea squalenifaciens DSM 18772",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900141815.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02745181",
        "wgs_master": "FQYR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1123071",
        "species_taxid": "407226",
        "organism_name": "Rubritalea squalenifaciens DSM 18772",
        "infraspecific_name": "strain=DSM 18772",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/12/03",
        "asm_name": "IMG-taxon 2582581871 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900141815.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/141/815/GCF_900141815.1_IMG-taxon_2582581871_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4322488",
        "genome_size_ungapped": "4321138",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "17",
        "contig_count": "17",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900141815.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "3790",
        "protein_coding_gene_count": "3727",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-12-03",
    "dateModified": "2016-12-03",
    "datePublished": "2016-12-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rubritalea squalenifaciens DSM 18772"
        ],
        "sample_taxid": [
            "1123071"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Miura peninsula (Kanagawa)"
        ],
        "sample_host_location_id": [],
        "data_size": "1.231 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4322488",
        "Number of Sequences": "17",
        "Longest Sequences (bp)": "1179753",
        "N50 (bp)": "1110293",
        "Gap Ratio (%)": "0.031232",
        "GCcontent (%)": "52.0",
        "Number of CDSs": "3733",
        "Average Protein Length": "338.1",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1433,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rubritalea marina",
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                "accession": "GCA_000378105.1",
                "taxid": 361055,
                "species_taxid": 361055,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubritalea profundi",
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                "accession": "GCA_002954445.1",
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                "species_taxid": 1658618,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloferula rosea",
                "strain": "strain=KCTC 22201",
                "accession": "GCA_016595525.1",
                "taxid": 490093,
                "species_taxid": 490093,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.124,
                "matched_fragments": 61,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteolibacter ambystomatis",
                "strain": "strain=32A",
                "accession": "GCA_018137965.1",
                "taxid": 2824561,
                "species_taxid": 2824561,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8733,
                "matched_fragments": 52,
                "total_fragments": 1433,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Persicirhabdus sediminis",
                "strain": "strain=_KCTC 22039",
                "accession": "GCA_016595495.1",
                "taxid": 454144,
                "species_taxid": 454144,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7258,
                "matched_fragments": 63,
                "total_fragments": 1433,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900141815.1",
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                "ani": 100.0,
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                "total_fragments": 1433,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Rubritalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "status": "conclusive"
            },
            {
                "accession": "GCF_000378105.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Rubritalea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002954445.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_016595525.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_014904755.1",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Persicirhabdus",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000739615.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.357,
        "cell_length": -0.188,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 26.0,
        "optimum_ph": 8.0,
        "genome_size": 4322488.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Rubritalea",
        "squalenifaciens",
        "DSM",
        "18772"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}