{ "type": "genome", "identifier": "GCF_900141875.1", "organism": "Tangfeifania diversioriginum", "title": "Tangfeifania diversioriginum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900141875.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444280", "wgs_master": "FQZE00000000.1", "refseq_category": "reference genome", "taxid": "1168035", "species_taxid": "1168035", "organism_name": "Tangfeifania diversioriginum", "infraspecific_name": "strain=DSM 27063", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2700988694 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900141875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/141/875/GCF_900141875.1_IMG-taxon_2700988694_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4779684", "genome_size_ungapped": "4779684", "gc_percent": "42.000000", "replicon_count": "0", "scaffold_count": "81", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900141875.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4061", "protein_coding_gene_count": "3990", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Tangfeifania diversioriginum" ], "sample_taxid": [ "1168035" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.351 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4779684", "Number of Sequences": "81", "Longest Sequences (bp)": "306988", "N50 (bp)": "124000", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.8", "Number of CDSs": "3960", "Average Protein Length": "356.0", "Coding Ratio (%)": "88.5", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tangfeifania diversioriginum", "strain": "strain=DSM 27063", "accession": "GCA_900141875.1", "taxid": 1168035, "species_taxid": 1168035, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1545, "total_fragments": 1550, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mariniphaga anaerophila", "strain": "strain=DSM 26910", "accession": "GCA_900129025.1", "taxid": 1484053, "species_taxid": 1484053, "relation_to_type": "type", "validated": true, "ani": 77.1623, "matched_fragments": 318, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniphaga sediminis", "strain": "strain=SY21", "accession": "GCA_003573545.1", "taxid": 1628158, "species_taxid": 1628158, "relation_to_type": "type", "validated": true, "ani": 77.0113, "matched_fragments": 317, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Draconibacterium mangrovi", "strain": "strain=GM2-18", "accession": "GCA_010586825.1", "taxid": 2697469, "species_taxid": 2697469, "relation_to_type": "type", "validated": true, "ani": 76.8155, "matched_fragments": 184, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribellus maritimus", "strain": "strain=5E3", "accession": "GCA_022267315.1", "taxid": 2870838, "species_taxid": 2870838, "relation_to_type": "type", "validated": true, "ani": 76.5346, "matched_fragments": 203, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribellus comscasis", "strain": "strain=WC007", "accession": "GCA_009762775.1", "taxid": 2681766, "species_taxid": 2681766, "relation_to_type": "type", "validated": true, "ani": 76.5212, "matched_fragments": 224, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Draconibacterium orientale", "strain": "strain=FH5", "accession": "GCA_000626635.1", "taxid": 1168034, "species_taxid": 1168034, "relation_to_type": "type", "validated": true, "ani": 76.5013, "matched_fragments": 217, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribellus luteus", "strain": "strain=XSD2", "accession": "GCA_003576475.1", "taxid": 2305463, "species_taxid": 2305463, "relation_to_type": "type", "validated": true, "ani": 76.4815, "matched_fragments": 195, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Draconibacterium orientale", "strain": "strain=DSM 25947", "accession": "GCA_900111425.1", "taxid": 1168034, "species_taxid": 1168034, "relation_to_type": "type", "validated": true, "ani": 76.4569, "matched_fragments": 216, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribellus sediminis", "strain": "strain=Y2-1-60", "accession": "GCA_011799805.1", "taxid": 2696285, "species_taxid": 2696285, "relation_to_type": "type", "validated": true, "ani": 76.2729, "matched_fragments": 200, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Draconibacterium sediminis", "strain": "strain=JN14CK-3", "accession": "GCA_000949475.1", "taxid": 1544798, "species_taxid": 1544798, "relation_to_type": "type", "validated": true, "ani": 76.1995, "matched_fragments": 219, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900141875.1", "gtdb_species": "s__Tangfeifania diversioriginum", "ani": 100.0, "matched_fragments": 1545, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Tangfeifania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900129025.1", "gtdb_species": "s__Mariniphaga anaerophila", "ani": 77.1789, "matched_fragments": 316, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Mariniphaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003573545.1", "gtdb_species": "s__Mariniphaga sediminis", "ani": 77.0058, "matched_fragments": 317, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Mariniphaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016931875.1", "gtdb_species": "s__Draconibacterium sp016931875", "ani": 76.9188, "matched_fragments": 182, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010586825.1", "gtdb_species": "s__Draconibacterium mangrovi", "ani": 76.815, "matched_fragments": 184, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011620585.1", "gtdb_species": "s__Draconibacterium sp011620585", "ani": 76.5639, "matched_fragments": 144, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009762775.1", "gtdb_species": "s__Draconibacterium comscasis", "ani": 76.5296, "matched_fragments": 223, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000626635.1", "gtdb_species": "s__Draconibacterium orientale", "ani": 76.5014, "matched_fragments": 217, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003576475.1", "gtdb_species": "s__Draconibacterium luteum", "ani": 76.4909, "matched_fragments": 194, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016705335.1", "gtdb_species": "s__Draconibacterium sp016705335", "ani": 76.449, "matched_fragments": 150, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018400515.1", "gtdb_species": "s__Tangfeifania sp018400515", "ani": 76.3047, "matched_fragments": 142, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Tangfeifania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011799805.1", "gtdb_species": "s__Draconibacterium sp011799805", "ani": 76.2729, "matched_fragments": 200, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.71", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_009773765.1", "gtdb_species": "s__Draconibacterium sp009773765", "ani": 76.2705, "matched_fragments": 182, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000949475.1", "gtdb_species": "s__Draconibacterium sediminis", "ani": 76.2065, "matched_fragments": 218, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010448835.1", "gtdb_species": "s__Draconibacterium halophilum", "ani": 76.1771, "matched_fragments": 185, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003516705.1", "gtdb_species": "s__Draconibacterium sp003516705", "ani": 76.1257, "matched_fragments": 125, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013203525.1", "gtdb_species": "s__JABMQB01 sp013203525", "ani": 75.342, "matched_fragments": 67, "total_fragments": 1550, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__JABMQB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": null, "genome_size": 4779684.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Tangfeifania", "diversioriginum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }