{ "type": "genome", "identifier": "GCF_900141925.1", "organism": "Pseudomonas zeshuii", "title": "Pseudomonas zeshuii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900141925.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216295", "wgs_master": "FQYS00000000.1", "refseq_category": "reference genome", "taxid": "1076620", "species_taxid": "1076620", "organism_name": "Pseudomonas zeshuii", "infraspecific_name": "strain=KACC 15471", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2663762797 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900141925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/141/925/GCF_900141925.1_IMG-taxon_2663762797_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5339831", "genome_size_ungapped": "5338936", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900141925.1-RS_2024_04_25", "annotation_date": "2024-04-25", "total_gene_count": "5003", "protein_coding_gene_count": "4850", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas zeshuii" ], "sample_taxid": [ "1076620" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.525 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5339831", "Number of Sequences": "33", "Longest Sequences (bp)": "690911", "N50 (bp)": "262608", "Gap Ratio (%)": "0.016761", "GCcontent (%)": "55.3", "Number of CDSs": "4989", "Average Protein Length": "311.9", "Coding Ratio (%)": "87.4", "Number of rRNAs": "8", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas zeshuii", "strain": "strain=KACC 15471", "accession": "GCA_900141925.1", "taxid": 1076620, "species_taxid": 1076620, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1761, "total_fragments": 1763, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas asuensis", "strain": "strain=JCM 13501", "accession": "GCA_014646755.1", "taxid": 1825787, "species_taxid": 1825787, "relation_to_type": "type", "validated": true, "ani": 85.3311, "matched_fragments": 1331, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas duriflava", "strain": "strain=CGMCC 1.6858", "accession": "GCA_007830155.1", "taxid": 459528, "species_taxid": 459528, "relation_to_type": "type", "validated": true, "ani": 79.9363, "matched_fragments": 638, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas psychrotolerans", "strain": "strain=DSM 15758", "accession": "GCA_900102665.1", "taxid": 237610, "species_taxid": 237610, 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