{ "type": "genome", "identifier": "GCF_900141945.1", "organism": "Thalassobacter stenotrophicus DSM 16310", "title": "Thalassobacter stenotrophicus DSM 16310", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900141945.1", "bioproject": "PRJNA224116", "biosample": "SAMN02744035", "wgs_master": "FQYZ00000000.1", "refseq_category": "na", "taxid": "1123361", "species_taxid": "266809", "organism_name": "Thalassobacter stenotrophicus DSM 16310", "infraspecific_name": "strain=DSM 16310", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2585427601 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900141945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/141/945/GCF_900141945.1_IMG-taxon_2585427601_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3598816", "genome_size_ungapped": "3597846", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900141945.1-RS_2024_04_25", "annotation_date": "2024-04-25", "total_gene_count": "3623", "protein_coding_gene_count": "3529", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Thalassobacter stenotrophicus DSM 16310" ], "sample_taxid": [ "1123361" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain: Valencia" ], "sample_host_location_id": [], "data_size": "1.021 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3598816", "Number of Sequences": "39", "Longest Sequences (bp)": "682706", "N50 (bp)": "255911", "Gap Ratio (%)": "0.026953", "GCcontent (%)": "58.6", "Number of CDSs": "3598", "Average Protein Length": "303.1", "Coding Ratio (%)": "90.9", "Number of rRNAs": "2", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thalassobacter stenotrophicus", "strain": "strain=DSM 16310", "accession": "GCA_900141945.1", "taxid": 266809, "species_taxid": 266809, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1180, "total_fragments": 1180, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Thalassobacter stenotrophicus", "strain": "strain=CECT 5294", "accession": "GCA_001458315.1", "taxid": 266809, "species_taxid": 266809, "relation_to_type": "type", "validated": true, "ani": 99.9925, "matched_fragments": 1157, "total_fragments": 1180, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shimia marina", "strain": "strain=CECT 7688", "accession": "GCA_001458175.1", "taxid": 321267, "species_taxid": 321267, "relation_to_type": "type", "validated": true, "ani": 79.7527, "matched_fragments": 127, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 79.4831, "matched_fragments": 141, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum adriaticum", "strain": "strain=DSM 2781", "accession": "GCA_016583705.1", "taxid": 35804, "species_taxid": 35804, "relation_to_type": "type", "validated": true, "ani": 79.1401, "matched_fragments": 158, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tritonibacter scottomollicae", "strain": "strain=DSM 25328", "accession": "GCA_003003215.1", "taxid": 483013, "species_taxid": 483013, "relation_to_type": "type", "validated": true, "ani": 78.8337, "matched_fragments": 182, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius mucosus", "strain": "strain=DSM 17069", "accession": "GCA_000768555.3", "taxid": 215743, "species_taxid": 215743, "relation_to_type": "type", "validated": true, "ani": 78.3122, "matched_fragments": 145, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius nubinhibens", "strain": "strain=ISM", "accession": "GCA_000152625.1", "taxid": 314263, "species_taxid": 314263, "relation_to_type": "type", "validated": true, "ani": 78.2287, "matched_fragments": 158, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.1734, "matched_fragments": 159, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pacificitalea manganoxidans", "strain": "strain=DY25", "accession": "GCA_002504165.1", "taxid": 1411902, "species_taxid": 1411902, "relation_to_type": "type", "validated": true, "ani": 78.0261, "matched_fragments": 154, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius confluentis", "strain": "strain=SAG6", "accession": "GCA_002917925.1", "taxid": 1852027, "species_taxid": 1852027, "relation_to_type": "type", "validated": true, "ani": 77.7967, "matched_fragments": 150, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagimonas phthalicica", "strain": "strain=DSM 26923", "accession": "GCA_004364805.1", "taxid": 1037362, "species_taxid": 1037362, "relation_to_type": "type", "validated": true, "ani": 77.5116, "matched_fragments": 158, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=Ar-45", "accession": "GCA_002786285.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 77.3727, "matched_fragments": 135, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 77.3326, "matched_fragments": 174, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola antarcticus", "strain": "strain=CGMCC 1.12662", "accession": "GCA_900215355.1", "taxid": 1247613, "species_taxid": 1247613, "relation_to_type": "type", "validated": true, "ani": 77.2222, "matched_fragments": 132, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8751, "matched_fragments": 158, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudopuniceibacterium antarcticum", "strain": "strain=HQ09", "accession": "GCA_014899185.1", "taxid": 2613965, "species_taxid": 2613965, "relation_to_type": "type", "validated": true, "ani": 76.839, "matched_fragments": 140, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 76.7971, "matched_fragments": 159, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivita boseongensis", "strain": "strain=BS-B2", "accession": "GCA_001262635.1", "taxid": 1470562, "species_taxid": 1470562, "relation_to_type": "type", "validated": true, "ani": 76.7178, "matched_fragments": 160, "total_fragments": 1180, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", 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"ani": 78.3089, "matched_fragments": 176, "total_fragments": 1180, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ascidiaceihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000152625.1", "gtdb_species": "s__Roseovarius nubinhibens", "ani": 78.2242, "matched_fragments": 157, "total_fragments": 1180, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.78", "min_intra_species_ani": "96.50", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001650875.1", "gtdb_species": "s__Sulfitobacter sp001650875", "ani": 77.8512, "matched_fragments": 171, "total_fragments": 1180, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002917925.1", "gtdb_species": "s__Roseovarius confluentis", "ani": 77.7891, "matched_fragments": 149, "total_fragments": 1180, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Roseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "98.93", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004364805.1", "gtdb_species": "s__Pelagimonas phthalicica", "ani": 77.5139, 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