{
    "type": "genome",
    "identifier": "GCF_900141975.1",
    "organism": "Aureimonas altamirensis DSM 21988",
    "title": "Aureimonas altamirensis DSM 21988",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900141975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02745911",
        "wgs_master": "FQZC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121026",
        "species_taxid": "370622",
        "organism_name": "Aureimonas altamirensis DSM 21988",
        "infraspecific_name": "strain=DSM 21988",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/12/03",
        "asm_name": "IMG-taxon 2585427611 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900141975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/141/975/GCF_900141975.1_IMG-taxon_2585427611_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4190965",
        "genome_size_ungapped": "4190670",
        "gc_percent": "65.000000",
        "replicon_count": "0",
        "scaffold_count": "11",
        "contig_count": "11",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900141975.1-RS_2024_04_25",
        "annotation_date": "2024-04-25",
        "total_gene_count": "4027",
        "protein_coding_gene_count": "3937",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-12-03",
    "dateModified": "2016-12-03",
    "datePublished": "2016-12-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aureimonas altamirensis DSM 21988"
        ],
        "sample_taxid": [
            "1121026"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain:Altamira Cave, Cantabria"
        ],
        "sample_host_location_id": [],
        "data_size": "1.157 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4190965",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "1262608",
        "N50 (bp)": "1054710",
        "Gap Ratio (%)": "0.007039",
        "GCcontent (%)": "64.8",
        "Number of CDSs": "3986",
        "Average Protein Length": "321.7",
        "Coding Ratio (%)": "91.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aureimonas altamirensis",
                "strain": "strain=DSM 21988",
                "accession": "GCA_900141975.1",
                "taxid": 370622,
                "species_taxid": 370622,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1391,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aureimonas altamirensis",
                "strain": "strain=DSM 21988",
                "accession": "GCA_001463885.1",
                "taxid": 370622,
                "species_taxid": 370622,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9893,
                "matched_fragments": 1378,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aureimonas frigidaquae",
                "strain": "strain=JCM 14755",
                "accession": "GCA_001463905.1",
                "taxid": 424757,
                "species_taxid": 424757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7021,
                "matched_fragments": 750,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aureimonas populi",
                "strain": "strain=KCTC 42087",
                "accession": "GCA_017815515.1",
                "taxid": 1701758,
                "species_taxid": 1701758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0274,
                "matched_fragments": 495,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aureimonas ureilytica",
                "strain": "strain=NBRC 106430",
                "accession": "GCA_001463945.1",
                "taxid": 401562,
                "species_taxid": 401562,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9559,
                "matched_fragments": 475,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aurantimonas manganoxydans",
                "strain": "strain=SI85-9A1",
                "accession": "GCA_000153465.1",
                "taxid": 651183,
                "species_taxid": 651183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6731,
                "matched_fragments": 431,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aurantimonas manganoxydans",
                "strain": "strain=DSM 21871",
                "accession": "GCA_001463865.1",
                "taxid": 651183,
                "species_taxid": 651183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6662,
                "matched_fragments": 428,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aureimonas mangrovi",
                "strain": "strain=LMG 31693",
                "accession": "GCA_014058705.1",
                "taxid": 2758041,
                "species_taxid": 2758041,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6618,
                "matched_fragments": 469,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aurantimonas endophytica",
                "strain": "strain=KCTC 52296",
                "accession": "GCA_024105745.1",
                "taxid": 1522175,
                "species_taxid": 1522175,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4159,
                "matched_fragments": 428,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella daejeonensis",
                "strain": "strain=JCM 16236",
                "accession": "GCA_024281235.1",
                "taxid": 659017,
                "species_taxid": 659017,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3891,
                "matched_fragments": 276,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jiella sonneratiae",
                "strain": "strain=MQZ13P-4",
                "accession": "GCA_017353515.1",
                "taxid": 2816856,
                "species_taxid": 2816856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.092,
                "matched_fragments": 404,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aurantimonas marina",
                "strain": "strain=SW136",
                "accession": "GCA_017183135.1",
                "taxid": 2780508,
                "species_taxid": 2780508,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7914,
                "matched_fragments": 332,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Consotaella salsifontis",
                "strain": "strain=USBA 369",
                "accession": "GCA_900167365.1",
                "taxid": 1365950,
                "species_taxid": 1365950,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6619,
                "matched_fragments": 299,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquibium oceanicum",
                "strain": "strain=B7",
                "accession": "GCA_001889605.1",
                "taxid": 1670800,
                "species_taxid": 1670800,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5436,
                "matched_fragments": 284,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium onobrychidis",
                "strain": "strain=OM4",
                "accession": "GCA_024707545.1",
                "taxid": 2775404,
                "species_taxid": 2775404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4325,
                "matched_fragments": 295,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium sophorae",
                "strain": "strain=CCBAU 03386",
                "accession": "GCA_013087515.1",
                "taxid": 1535242,
                "species_taxid": 1535242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1269,
                "matched_fragments": 281,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium oryzihabitans",
                "strain": "strain=TER-1",
                "accession": "GCA_004004555.2",
                "taxid": 2499852,
                "species_taxid": 2499852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6532,
                "matched_fragments": 253,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium terricola",
                "strain": "strain=17Sr1-39",
                "accession": "GCA_006151805.1",
                "taxid": 2583531,
                "species_taxid": 2583531,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6501,
                "matched_fragments": 261,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium isbiliense",
                "strain": "strain=DSM 17168",
                "accession": "GCA_022179325.1",
                "taxid": 315478,
                "species_taxid": 315478,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4802,
                "matched_fragments": 241,
                "total_fragments": 1391,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001463885.1",
                "gtdb_species": "s__Aureimonas altamirensis",
                "ani": 99.9893,
                "matched_fragments": 1378,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014844055.1",
                "gtdb_species": "s__Aureimonas altamirensis_A",
                "ani": 91.8158,
                "matched_fragments": 1166,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.71",
                "min_intra_species_ani": "97.71",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001463905.1",
                "gtdb_species": "s__Aureimonas frigidaquae",
                "ani": 80.6858,
                "matched_fragments": 752,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017815515.1",
                "gtdb_species": "s__Aureimonas populi",
                "ani": 79.0278,
                "matched_fragments": 495,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000382705.1",
                "gtdb_species": "s__Aureimonas ureilytica",
                "ani": 78.9536,
                "matched_fragments": 482,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000153465.1",
                "gtdb_species": "s__Aurantimonas manganoxydans",
                "ani": 78.6837,
                "matched_fragments": 429,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aurantimonas",
                "ani_circumscription_radius": 95.4342,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014058705.1",
                "gtdb_species": "s__Aureimonas mangrovi",
                "ani": 78.671,
                "matched_fragments": 469,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001463705.1",
                "gtdb_species": "s__Aureimonas sp001463705",
                "ani": 78.626,
                "matched_fragments": 494,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000421645.1",
                "gtdb_species": "s__Aurantimonas coralicida",
                "ani": 78.4467,
                "matched_fragments": 472,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aurantimonas",
                "ani_circumscription_radius": 95.4342,
                "mean_intra_species_ani": "97.41",
                "min_intra_species_ani": "96.44",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_017353515.1",
                "gtdb_species": "s__Jiella sp017353515",
                "ani": 78.1011,
                "matched_fragments": 403,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Jiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017349315.1",
                "gtdb_species": "s__Jiella sp017349315",
                "ani": 77.6523,
                "matched_fragments": 323,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Jiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001889605.1",
                "gtdb_species": "s__Mesorhizobium_E oceanicum",
                "ani": 77.5769,
                "matched_fragments": 281,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Mesorhizobium_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001262505.1",
                "gtdb_species": "s__Shinella sp001262505",
                "ani": 77.214,
                "matched_fragments": 324,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Shinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_004004555.2",
                "gtdb_species": "s__Methylobacterium sp004004555",
                "ani": 76.6715,
                "matched_fragments": 254,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001423085.1",
                "gtdb_species": "s__Methylobacterium sp001423085",
                "ani": 76.5061,
                "matched_fragments": 192,
                "total_fragments": 1391,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.83",
                "min_intra_species_ani": "97.83",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.046,
        "cell_length": 0.041,
        "doubling_h": null,
        "growth_tmp": 29.5,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.25,
        "genome_size": 4197019.667,
        "gc_content": 65.18,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 1.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Aureimonas",
        "altamirensis",
        "DSM",
        "21988"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}