{ "type": "genome", "identifier": "GCF_900141985.1", "organism": "Nocardiopsis flavescens", "title": "Nocardiopsis flavescens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900141985.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421803", "wgs_master": "FQZK00000000.1", "refseq_category": "reference genome", "taxid": "758803", "species_taxid": "758803", "organism_name": "Nocardiopsis flavescens", "infraspecific_name": "strain=CGMCC 4.5723", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2675903133 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900141985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/141/985/GCF_900141985.1_IMG-taxon_2675903133_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7172933", "genome_size_ungapped": "7171718", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900141985.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "6250", "protein_coding_gene_count": "6124", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis flavescens" ], "sample_taxid": [ "758803" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.895 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7172933", "Number of Sequences": "71", "Longest Sequences (bp)": "985279", "N50 (bp)": "263208", "Gap Ratio (%)": "0.016939", "GCcontent (%)": "74.1", "Number of CDSs": "6268", "Average Protein Length": "322.9", "Coding Ratio (%)": "84.7", "Number of rRNAs": "1", "Number of tRNAs": "82", "Number of CRISPRs": "14" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis flavescens", "strain": "strain=CGMCC 4.5723", "accession": "GCA_900141985.1", 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