{ "type": "genome", "identifier": "GCF_900142035.1", "organism": "Flavobacterium terrae", "title": "Flavobacterium terrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900142035.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444363", "wgs_master": "FQZI00000000.1", "refseq_category": "reference genome", "taxid": "415425", "species_taxid": "415425", "organism_name": "Flavobacterium terrae", "infraspecific_name": "strain=DSM 18829", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2695421047 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900142035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/142/035/GCF_900142035.1_IMG-taxon_2695421047_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3161259", "genome_size_ungapped": "3161259", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900142035.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "2925", "protein_coding_gene_count": "2860", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium terrae" ], "sample_taxid": [ "415425" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Republic of Korea, Daejeon region" ], "sample_host_location_id": [], "data_size": "0.875 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3161259", "Number of Sequences": "19", "Longest Sequences (bp)": "972192", "N50 (bp)": "802779", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.8", "Number of CDSs": "2864", "Average Protein Length": "335.8", "Coding Ratio (%)": "91.3", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium terrae", "strain": "strain=DSM 18829", "accession": "GCA_900142035.1", "taxid": 415425, "species_taxid": 415425, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1042, "total_fragments": 1043, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 79.4148, "matched_fragments": 403, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amnicola", "strain": "strain=LLJ-11", "accession": "GCA_004122165.1", "taxid": 2506422, "species_taxid": 2506422, "relation_to_type": "type", "validated": true, "ani": 79.3704, "matched_fragments": 376, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 78.9654, "matched_fragments": 277, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 78.6755, "matched_fragments": 320, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 78.5706, "matched_fragments": 253, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium davisii", "strain": "strain=90-106", "accession": "GCA_019565505.1", "taxid": 2906077, "species_taxid": 2906077, "relation_to_type": "type", "validated": true, "ani": 78.4469, "matched_fragments": 298, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sasangense", "strain": "strain=DSM 21067", "accession": "GCA_000686885.1", "taxid": 503361, "species_taxid": 503361, "relation_to_type": "type", "validated": true, "ani": 78.4413, "matched_fragments": 263, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium celericrescens", "strain": "strain=TWA-26", "accession": "GCA_011392075.1", "taxid": 2709780, "species_taxid": 2709780, "relation_to_type": "type", "validated": true, "ani": 78.1691, "matched_fragments": 271, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium humi", "strain": "strain=DS2-A", "accession": "GCA_004745595.1", "taxid": 2562683, "species_taxid": 2562683, "relation_to_type": "type", "validated": true, "ani": 78.1546, "matched_fragments": 201, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saliperosum", "strain": "strain=CGMCC 1.3801", "accession": "GCA_900100625.1", "taxid": 329186, "species_taxid": 329186, "relation_to_type": "type", "validated": true, "ani": 78.1494, "matched_fragments": 165, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=LMG 25203", "accession": "GCA_014385475.2", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 77.8253, "matched_fragments": 239, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=an-8", "accession": "GCA_014486675.1", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 77.7502, "matched_fragments": 244, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.6827, "matched_fragments": 219, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saccharophilum", "strain": "strain=DSM 1811", "accession": "GCA_900142735.1", "taxid": 29534, "species_taxid": 29534, "relation_to_type": "type", "validated": true, "ani": 77.5933, "matched_fragments": 222, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xinjiangense", "strain": "strain=CGMCC 1.2749", "accession": "GCA_900142885.1", "taxid": 178356, "species_taxid": 178356, "relation_to_type": "type", "validated": true, "ani": 77.5909, "matched_fragments": 186, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 77.3926, "matched_fragments": 273, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jumunjinense", "strain": "strain=HME7102", "accession": "GCA_021650975.2", "taxid": 998845, "species_taxid": 998845, "relation_to_type": "type", "validated": true, "ani": 77.2952, "matched_fragments": 243, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium urumqiense", "strain": "strain=CGMCC 1.9230", "accession": "GCA_900108015.1", "taxid": 935224, "species_taxid": 935224, "relation_to_type": "type", "validated": true, "ani": 77.0631, "matched_fragments": 174, "total_fragments": 1043, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900142035.1", "gtdb_species": "s__Flavobacterium terrae", "ani": 100.0, "matched_fragments": 1042, "total_fragments": 1043, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004959765.1", "gtdb_species": "s__Flavobacterium sp004959765", "ani": 79.8958, "matched_fragments": 451, "total_fragments": 1043, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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