{
    "type": "genome",
    "identifier": "GCF_900142065.1",
    "organism": "Agromyces cerinus subsp. cerinus",
    "title": "Agromyces cerinus subsp. cerinus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900142065.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05443544",
        "wgs_master": "FSRJ00000000.1",
        "refseq_category": "reference genome",
        "taxid": "232089",
        "species_taxid": "33878",
        "organism_name": "Agromyces cerinus subsp. cerinus",
        "infraspecific_name": "strain=DSM 8595",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/12/16",
        "asm_name": "IMG-taxon 2698536811 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900142065.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/142/065/GCF_900142065.1_IMG-taxon_2698536811_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4187509",
        "genome_size_ungapped": "4187509",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "8",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900142065.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "3941",
        "protein_coding_gene_count": "3868",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-12-16",
    "dateModified": "2016-12-16",
    "datePublished": "2016-12-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Agromyces cerinus subsp. cerinus"
        ],
        "sample_taxid": [
            "232089"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.110 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4187509",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "1310032",
        "N50 (bp)": "946216",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.0",
        "Number of CDSs": "3927",
        "Average Protein Length": "328.5",
        "Coding Ratio (%)": "92.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Agromyces cerinus subsp. cerinus",
                "strain": "strain=DSM 8595",
                "accession": "GCA_900142065.1",
                "taxid": 232089,
                "species_taxid": 33878,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1392,
                "total_fragments": 1392,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Agromyces hippuratus",
                "strain": "strain=DSM 8598",
                "accession": "GCA_013410355.1",
                "taxid": 286438,
                "species_taxid": 286438,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.0081,
                "matched_fragments": 1172,
                "total_fragments": 1392,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces fucosus",
                "strain": "strain=CCUG 35506",
                "accession": "GCA_004134865.1",
                "taxid": 41985,
                "species_taxid": 41985,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2489,
                "matched_fragments": 1102,
                "total_fragments": 1392,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces badenianii",
                "strain": "strain=MF30-A",
                "accession": "GCA_003070885.1",
                "taxid": 2080742,
                "species_taxid": 2080742,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9002,
                "matched_fragments": 840,
                "total_fragments": 1392,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces laixinhei",
                "strain": "strain=HY052",
                "accession": "GCA_006337065.1",
                "taxid": 2585717,
                "species_taxid": 2585717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8348,
                "matched_fragments": 843,
                "total_fragments": 1392,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces subbeticus",
                "strain": "strain=DSM 16689",
                "accession": "GCA_000421565.1",
                "taxid": 293890,
                "species_taxid": 293890,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8503,
                "matched_fragments": 951,
                "total_fragments": 1392,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces lapidis",
                "strain": "strain=JCM 14321",
                "accession": "GCA_009749405.1",
                "taxid": 279574,
                "species_taxid": 279574,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.517,
                "matched_fragments": 937,
                "total_fragments": 1392,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces cavernae",
                "strain": "strain=SYSU K20354",
                "accession": "GCA_021044935.1",
                "taxid": 2898659,
                "species_taxid": 2898659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6079,
                "matched_fragments": 890,
                "total_fragments": 1392,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces mariniharenae",
                "strain": "strain=NEAU-184",
                "accession": "GCA_008122505.1",
                "taxid": 2604423,
                "species_taxid": 2604423,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5568,
                "matched_fragments": 862,
                "total_fragments": 1392,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces humatus",
                "strain": "strain=JCM 14319",
                "accession": "GCA_021228295.1",
                "taxid": 279573,
                "species_taxid": 279573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2788,
                "matched_fragments": 834,
                "total_fragments": 1392,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces flavus",
                "strain": "strain=CPCC 202695",
                "accession": "GCA_004366335.2",
                "taxid": 589382,
                "species_taxid": 589382,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.95,
                "matched_fragments": 762,
                "total_fragments": 1392,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces archimandritae",
                "strain": "strain=G127AT",
                "accession": "GCA_018024495.1",
                "taxid": 2781962,
                "species_taxid": 2781962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1071,
                "matched_fragments": 632,
                "total_fragments": 1392,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900142065.1",
                "gtdb_species": "s__Agromyces cerinus",
                "ani": 100.0,
                "matched_fragments": 1392,
                "total_fragments": 1392,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016907835.1",
                "gtdb_species": "s__Agromyces cerinus_A",
                "ani": 93.2671,
                "matched_fragments": 1184,
                "total_fragments": 1392,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013410355.1",
                "gtdb_species": "s__Agromyces hippuratus",
                "ani": 93.0081,
                "matched_fragments": 1172,
                "total_fragments": 1392,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004134865.1",
                "gtdb_species": "s__Agromyces fucosus",
                "ani": 90.2345,
                "matched_fragments": 1103,
                "total_fragments": 1392,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "98.22",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001429165.1",
                "gtdb_species": "s__Agromyces sp001429165",
                "ani": 90.1685,
                "matched_fragments": 1084,
                "total_fragments": 1392,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.658,
        "cell_length": 0.065,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 27.525,
        "optimum_ph": 7.25,
        "genome_size": 4187509.0,
        "gc_content": 69.898,
        "coding_genes": 3766.5,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 51.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Agromyces",
        "cerinus",
        "subsp.",
        "cerinus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}