{
    "type": "genome",
    "identifier": "GCF_900142095.1",
    "organism": "Thermoclostridium caenicola",
    "title": "Thermoclostridium caenicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900142095.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05444373",
        "wgs_master": "FQZP00000000.1",
        "refseq_category": "reference genome",
        "taxid": "659425",
        "species_taxid": "659425",
        "organism_name": "Thermoclostridium caenicola",
        "infraspecific_name": "strain=DSM 19027",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/09/11",
        "asm_name": "IMG-taxon 2700988698 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900142095.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/142/095/GCF_900142095.1_IMG-taxon_2700988698_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2890486",
        "genome_size_ungapped": "2890049",
        "gc_percent": "51.000000",
        "replicon_count": "0",
        "scaffold_count": "125",
        "contig_count": "125",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900142095.1-RS_2024_04_07",
        "annotation_date": "2024-04-07",
        "total_gene_count": "2669",
        "protein_coding_gene_count": "2591",
        "non_coding_gene_count": "51",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-09-11",
    "dateModified": "2019-09-11",
    "datePublished": "2019-09-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermoclostridium caenicola"
        ],
        "sample_taxid": [
            "659425"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:19542130"
        ],
        "sample_host_location_id": [],
        "data_size": "0.824 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2890486",
        "Number of Sequences": "125",
        "Longest Sequences (bp)": "159092",
        "N50 (bp)": "43572",
        "Gap Ratio (%)": "0.015119",
        "GCcontent (%)": "50.9",
        "Number of CDSs": "2607",
        "Average Protein Length": "317.5",
        "Coding Ratio (%)": "85.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thermoclostridium caenicola",
                "strain": "strain=DSM 19027",
                "accession": "GCA_900142095.1",
                "taxid": 659425,
                "species_taxid": 659425,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 891,
                "total_fragments": 896,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermoclostridium stercorarium subsp. leptospartum",
                "strain": "strain=DSM 9219",
                "accession": "GCA_001697285.1",
                "taxid": 160385,
                "species_taxid": 1510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1917,
                "matched_fragments": 61,
                "total_fragments": 896,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900142095.1",
                "gtdb_species": "s__Thermoclostridium_A caenicola",
                "ani": 100.0,
                "matched_fragments": 891,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__DSM-8532;g__Thermoclostridium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_012719645.1",
                "gtdb_species": "s__Thermoclostridium_A sp012719645",
                "ani": 78.8384,
                "matched_fragments": 427,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__DSM-8532;g__Thermoclostridium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001512555.1",
                "gtdb_species": "s__Thermoclostridium_A sp001512555",
                "ani": 78.7657,
                "matched_fragments": 354,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__DSM-8532;g__Thermoclostridium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.53",
                "min_intra_species_ani": "99.53",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012518025.1",
                "gtdb_species": "s__Thermoclostridium_A sp012518025",
                "ani": 78.6957,
                "matched_fragments": 314,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__DSM-8532;g__Thermoclostridium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012728015.1",
                "gtdb_species": "s__Thermoclostridium_A sp012728015",
                "ani": 78.4964,
                "matched_fragments": 366,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__DSM-8532;g__Thermoclostridium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012719545.1",
                "gtdb_species": "s__DTU059 sp012719545",
                "ani": 76.6181,
                "matched_fragments": 58,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__DSM-8532;g__DTU059",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002376415.1",
                "gtdb_species": "s__DTU059 sp002376415",
                "ani": 76.4149,
                "matched_fragments": 96,
                "total_fragments": 896,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Acetivibrionales;f__DSM-8532;g__DTU059",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Thermoclostridium",
        "caenicola"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}