{ "type": "genome", "identifier": "GCF_900142165.1", "organism": "Hespellia stercorisuis DSM 15480", "title": "Hespellia stercorisuis DSM 15480", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900142165.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745243", "wgs_master": "FQZY00000000.1", "refseq_category": "reference genome", "taxid": "1121950", "species_taxid": "180311", "organism_name": "Hespellia stercorisuis DSM 15480", "infraspecific_name": "strain=DSM 15480", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2585428171 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900142165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/142/165/GCF_900142165.1_IMG-taxon_2585428171_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4402942", "genome_size_ungapped": "4400277", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "160", "contig_count": "160", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900142165.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4206", "protein_coding_gene_count": "4028", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Hespellia stercorisuis DSM 15480" ], "sample_taxid": [ "1121950" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:near Peoria, IL, USA" ], "sample_host_location_id": [], "data_size": "1.253 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4402942", "Number of Sequences": "160", "Longest Sequences (bp)": "197597", "N50 (bp)": "57703", "Gap Ratio (%)": "0.060528", "GCcontent (%)": "45.3", "Number of CDSs": "4076", "Average Protein Length": "313.2", "Coding Ratio (%)": "87.0", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hespellia stercorisuis", "strain": "strain=DSM 15480", "accession": "GCA_900142165.1", "taxid": 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"strain=SW178", "accession": "GCA_008691045.1", "taxid": 2594882, "species_taxid": 2594882, "relation_to_type": "type", "validated": true, "ani": 77.6226, "matched_fragments": 98, "total_fragments": 1386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia obeum", "strain": "strain=ATCC 29174", "accession": "GCA_000153905.1", "taxid": 40520, "species_taxid": 40520, "relation_to_type": "type", "validated": true, "ani": 77.5753, "matched_fragments": 88, "total_fragments": 1386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia obeum", "strain": "strain=ATCC 29174", "accession": "GCA_025147765.1", "taxid": 40520, "species_taxid": 40520, "relation_to_type": "type", "validated": true, "ani": 77.2964, "matched_fragments": 89, "total_fragments": 1386, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schaedlerella arabinosiphila", "strain": "strain=DSM 106076", "accession": "GCA_003885045.1", "taxid": 2044587, 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