{
    "type": "genome",
    "identifier": "GCF_900142175.1",
    "organism": "Maribacter aquivivus",
    "title": "Maribacter aquivivus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900142175.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04488007",
        "wgs_master": "FQZX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "228958",
        "species_taxid": "228958",
        "organism_name": "Maribacter aquivivus",
        "infraspecific_name": "strain=DSM 16478",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/12/03",
        "asm_name": "IMG-taxon 2622736581 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900142175.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/142/175/GCF_900142175.1_IMG-taxon_2622736581_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4578396",
        "genome_size_ungapped": "4573243",
        "gc_percent": "34.500000",
        "replicon_count": "0",
        "scaffold_count": "11",
        "contig_count": "11",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900142175.1-RS_2024_11_06",
        "annotation_date": "2024-11-06",
        "total_gene_count": "4003",
        "protein_coding_gene_count": "3939",
        "non_coding_gene_count": "48",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-12-03",
    "dateModified": "2016-12-03",
    "datePublished": "2016-12-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Maribacter aquivivus"
        ],
        "sample_taxid": [
            "228958"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.280 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4578396",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "2431341",
        "N50 (bp)": "2431341",
        "Gap Ratio (%)": "0.112550",
        "GCcontent (%)": "34.5",
        "Number of CDSs": "3927",
        "Average Protein Length": "347.9",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Maribacter aquivivus",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Maribacter caenipelagi",
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                "status": "below_threshold"
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                "matched_fragments": 1117,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Maribacter ulvicola",
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                "accession": "GCA_900155985.1",
                "taxid": 228959,
                "species_taxid": 228959,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.259,
                "matched_fragments": 993,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter dokdonensis",
                "strain": "strain=KCTC 12392",
                "accession": "GCA_024362345.1",
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                "species_taxid": 326329,
                "relation_to_type": "type",
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                "ani": 76.1864,
                "matched_fragments": 126,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Poritiphilus flavus",
                "strain": "strain=R33",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0902,
                "matched_fragments": 57,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aestuariivivens marinum",
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                "accession": "GCA_022662175.1",
                "taxid": 2913555,
                "species_taxid": 2913555,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8571,
                "matched_fragments": 74,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salegentibacter lacus",
                "strain": "strain=LM13S",
                "accession": "GCA_020164555.1",
                "taxid": 2873599,
                "species_taxid": 2873599,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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                "accession": "GCF_900142175.1",
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                "total_fragments": 1521,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Maribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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                "accession": "GCF_004364175.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "aquivivus"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}