{ "type": "genome", "identifier": "GCF_900142195.1", "organism": "Paraburkholderia terricola", "title": "Paraburkholderia terricola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900142195.1", "bioproject": "PRJNA224116", "biosample": "SAMN05192548", "wgs_master": "FRAB00000000.1", "refseq_category": "na", "taxid": "169427", "species_taxid": "169427", "organism_name": "Paraburkholderia terricola", "infraspecific_name": "strain=LMG 20594", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2654588105 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900142195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/142/195/GCF_900142195.1_IMG-taxon_2654588105_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7321401", "genome_size_ungapped": "7319155", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "114", "contig_count": "114", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-26", "total_gene_count": "6780", "protein_coding_gene_count": "6555", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia terricola" ], "sample_taxid": [ "169427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.028 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7321401", "Number of Sequences": "114", "Longest Sequences (bp)": "380545", "N50 (bp)": "144482", "Gap Ratio (%)": "0.030677", "GCcontent (%)": "63.6", "Number of CDSs": "6577", "Average Protein Length": "315.1", "Coding Ratio (%)": "84.9", "Number of rRNAs": "4", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia terricola", "strain": "strain=LMG 20594", "accession": "GCA_900142195.1", "taxid": 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"ani": 87.1383, "matched_fragments": 1567, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 86.901, "matched_fragments": 1597, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia panacisoli", "strain": "strain=DCY113", "accession": "GCA_008369935.1", "taxid": 2603818, "species_taxid": 2603818, "relation_to_type": "type", "validated": true, "ani": 86.8801, "matched_fragments": 1568, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia haematera", "strain": "strain=LMG 31837", "accession": "GCA_905220975.1", "taxid": 2793077, "species_taxid": 2793077, "relation_to_type": "type", "validated": true, "ani": 86.8767, "matched_fragments": 1468, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia lacunae", "strain": "strain=S27", "accession": "GCA_003353175.1", "taxid": 2211104, "species_taxid": 2211104, "relation_to_type": "type", "validated": true, "ani": 86.8737, "matched_fragments": 1581, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 86.764, "matched_fragments": 1480, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ribeironis", "strain": "strain=STM 7296", "accession": "GCA_900019265.2", "taxid": 1247936, "species_taxid": 1247936, "relation_to_type": "type", "validated": true, "ani": 86.6689, "matched_fragments": 1378, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia solitsugae", "strain": "strain=1N", "accession": "GCA_013177695.1", "taxid": 2675748, "species_taxid": 2675748, "relation_to_type": "type", "validated": true, "ani": 86.6027, "matched_fragments": 1511, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia bryophila", "strain": "strain=LMG 23644", "accession": "GCA_003269035.1", "taxid": 420952, "species_taxid": 420952, "relation_to_type": "type", "validated": true, "ani": 86.5923, "matched_fragments": 1508, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia fungorum", "strain": "strain=LMG 16225", "accession": "GCA_902833645.1", "taxid": 134537, "species_taxid": 134537, "relation_to_type": "suspected-type", "validated": true, "ani": 86.2763, "matched_fragments": 1553, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia fungorum", "strain": "strain=NBRC 102489", "accession": "GCA_000685055.1", "taxid": 134537, "species_taxid": 134537, "relation_to_type": "type", "validated": true, "ani": 86.2294, "matched_fragments": 1515, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia metrosideri", "strain": "strain=LMG 28140", "accession": "GCA_904848625.1", "taxid": 580937, "species_taxid": 580937, "relation_to_type": "type", "validated": true, "ani": 85.5674, "matched_fragments": 1363, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia kirstenboschensis", "strain": "strain=KB15", "accession": "GCA_001636975.1", "taxid": 1245436, "species_taxid": 1245436, "relation_to_type": "type", "validated": true, "ani": 85.0466, "matched_fragments": 1227, "total_fragments": 2385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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