{ "type": "genome", "identifier": "GCF_900142235.1", "organism": "Tepidibacter formicigenes DSM 15518", "title": "Tepidibacter formicigenes DSM 15518", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900142235.1", "bioproject": "PRJNA224116", "biosample": "SAMN02744037", "wgs_master": "FRAE00000000.1", "refseq_category": "reference genome", "taxid": "1123349", "species_taxid": "227138", "organism_name": "Tepidibacter formicigenes DSM 15518", "infraspecific_name": "strain=DSM 15518", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2585428175 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900142235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/142/235/GCF_900142235.1_IMG-taxon_2585428175_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2639825", "genome_size_ungapped": "2635528", "gc_percent": "27.500000", "replicon_count": "0", "scaffold_count": "149", "contig_count": "149", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900142235.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2727", "protein_coding_gene_count": "2599", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Tepidibacter formicigenes DSM 15518" ], "sample_taxid": [ "1123349" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean:Mid-Atlantic Ridge" ], "sample_host_location_id": [], "data_size": "0.713 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2639630", "Number of Sequences": "148", "Longest Sequences (bp)": "104598", "N50 (bp)": "35323", "Gap Ratio (%)": "0.162788", "GCcontent (%)": "27.7", "Number of CDSs": "2578", "Average Protein Length": "294.6", "Coding Ratio (%)": "86.3", "Number of rRNAs": "8", "Number of tRNAs": "25", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tepidibacter formicigenes", "strain": "strain=DSM 15518", "accession": "GCA_900142235.1", "taxid": 227138, "species_taxid": 227138, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 798, "total_fragments": 807, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Tepidibacter thalassicus", "strain": "strain=DSM 15285", "accession": "GCA_900129915.1", "taxid": 214905, "species_taxid": 214905, "relation_to_type": "type", "validated": true, "ani": 87.0038, "matched_fragments": 561, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidibacter mesophilus", "strain": "strain=JCM 16806", "accession": "GCA_002724055.1", "taxid": 655607, "species_taxid": 655607, "relation_to_type": "type", "validated": true, "ani": 79.7281, "matched_fragments": 452, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraclostridium bifermentans", "strain": "strain=DSM 14991", "accession": "GCA_019916025.1", "taxid": 1490, "species_taxid": 1490, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter glycolicus", "strain": "strain=DSM 1288", "accession": "GCA_000439105.1", "taxid": 36841, "species_taxid": 36841, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3087, "matched_fragments": 136, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter glycolicus", "strain": "strain=ATCC 14880", "accession": "GCA_000373865.1", "taxid": 36841, "species_taxid": 36841, "relation_to_type": "suspected-type", "validated": true, "ani": 76.2723, "matched_fragments": 137, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peptacetobacter hominis", "strain": "strain=ZHW00191", "accession": "GCA_006861675.1", "taxid": 2743610, "species_taxid": 2743610, "relation_to_type": "type", "validated": true, "ani": 75.951, "matched_fragments": 70, "total_fragments": 807, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900142235.1", "gtdb_species": "s__Tepidibacter formicigenes", "ani": 100.0, "matched_fragments": 798, "total_fragments": 807, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Tepidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900129915.1", "gtdb_species": "s__Tepidibacter thalassicus", "ani": 86.9674, "matched_fragments": 562, "total_fragments": 807, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Tepidibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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