{ "type": "genome", "identifier": "GCF_900142365.1", "organism": "Pseudonocardia thermophila", "title": "Pseudonocardia thermophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900142365.1", "bioproject": "PRJNA224116", "biosample": "SAMN05443637", "wgs_master": "FRAP00000000.1", "refseq_category": "reference genome", "taxid": "1848", "species_taxid": "1848", "organism_name": "Pseudonocardia thermophila", "infraspecific_name": "strain=DSM 43832", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2700988696 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900142365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/142/365/GCF_900142365.1_IMG-taxon_2700988696_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6098214", "genome_size_ungapped": "6098214", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900142365.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "5951", "protein_coding_gene_count": "5790", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudonocardia thermophila" ], "sample_taxid": [ "1848" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.605 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6098214", "Number of Sequences": "47", "Longest Sequences (bp)": "485148", "N50 (bp)": "208403", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.9", "Number of CDSs": "5895", "Average Protein Length": "313.5", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudonocardia thermophila", "strain": "strain=DSM 43832", "accession": "GCA_900142365.1", 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"total_fragments": 2008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia hierapolitana", "strain": "strain=DSM 45671", "accession": "GCA_007994075.1", "taxid": 1128676, "species_taxid": 1128676, "relation_to_type": "type", "validated": true, "ani": 79.7127, "matched_fragments": 1081, "total_fragments": 2008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia xinjiangensis", "strain": "strain=JCM 11839", "accession": "GCA_012911925.1", "taxid": 75289, "species_taxid": 75289, "relation_to_type": "type", "validated": true, "ani": 79.6619, "matched_fragments": 933, "total_fragments": 2008, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia dioxanivorans", "strain": "strain=CB1190", "accession": "GCA_000196675.2", "taxid": 240495, "species_taxid": 240495, "relation_to_type": "type", "validated": true, "ani": 79.6429, "matched_fragments": 1038, "total_fragments": 2008, 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