{ "type": "genome", "identifier": "GCF_900142425.1", "organism": "Octadecabacter temperatus", "title": "Octadecabacter temperatus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900142425.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444287", "wgs_master": "FSRP00000000.1", "refseq_category": "na", "taxid": "1458307", "species_taxid": "1458307", "organism_name": "Octadecabacter temperatus", "infraspecific_name": "strain=DSM 26878", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/16", "asm_name": "IMG-taxon 2698536702 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900142425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/142/425/GCF_900142425.1_IMG-taxon_2698536702_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3263882", "genome_size_ungapped": "3263882", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-26", "total_gene_count": "3302", "protein_coding_gene_count": "3240", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-16", "dateModified": "2016-12-16", "datePublished": "2016-12-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Octadecabacter temperatus" ], "sample_taxid": [ "1458307" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.927 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3263882", "Number of Sequences": "4", "Longest Sequences (bp)": "2140860", "N50 (bp)": "2140860", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.7", "Number of CDSs": "3270", "Average Protein Length": "303.2", "Coding Ratio (%)": "91.1", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Octadecabacter temperatus", "strain": "strain=DSM 26878", "accession": "GCA_900142425.1", 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null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Octadecabacter", "temperatus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }