{ "type": "genome", "identifier": "GCF_900142605.1", "organism": "Chitinophaga jiangningensis", "title": "Chitinophaga jiangningensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900142605.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444266", "wgs_master": "FRBL00000000.1", "refseq_category": "reference genome", "taxid": "1419482", "species_taxid": "1419482", "organism_name": "Chitinophaga jiangningensis", "infraspecific_name": "strain=DSM 27406", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2700988700 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900142605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/142/605/GCF_900142605.1_IMG-taxon_2700988700_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7182135", "genome_size_ungapped": "7182135", "gc_percent": "47.500000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900142605.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "5751", "protein_coding_gene_count": "5667", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophaga jiangningensis" ], "sample_taxid": [ "1419482" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.040 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7182135", "Number of Sequences": "25", "Longest Sequences (bp)": "1062731", "N50 (bp)": "635715", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.4", "Number of CDSs": "5626", "Average Protein Length": "378.8", "Coding Ratio (%)": "89.0", "Number of rRNAs": "2", "Number of tRNAs": "68", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinophaga jiangningensis", "strain": "strain=DSM 27406", "accession": "GCA_900142605.1", 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2379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga niastensis", "strain": "strain=DSM 24859", "accession": "GCA_003014755.1", "taxid": 536980, "species_taxid": 536980, "relation_to_type": "type", "validated": true, "ani": 78.7423, "matched_fragments": 588, "total_fragments": 2379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga hostae", "strain": "strain=2R12", "accession": "GCA_018224885.1", "taxid": 2831022, "species_taxid": 2831022, "relation_to_type": "type", "validated": true, "ani": 78.7218, "matched_fragments": 617, "total_fragments": 2379, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga arvensicola", "strain": "strain=DSM 3695", "accession": "GCA_900110835.1", "taxid": 29529, "species_taxid": 29529, "relation_to_type": "type", "validated": true, "ani": 78.7013, "matched_fragments": 654, "total_fragments": 2379, "ani_threshold": 95, "status": "below_threshold" } ], 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