{ "type": "genome", "identifier": "GCF_900142615.1", "organism": "Chryseobacterium contaminans", "title": "Chryseobacterium contaminans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900142615.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444407", "wgs_master": "FRBM00000000.1", "refseq_category": "reference genome", "taxid": "1423959", "species_taxid": "1423959", "organism_name": "Chryseobacterium contaminans", "infraspecific_name": "strain=DSM 27621", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2700988701 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900142615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/142/615/GCF_900142615.1_IMG-taxon_2700988701_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4687840", "genome_size_ungapped": "4686786", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900142615.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4247", "protein_coding_gene_count": "4138", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium contaminans" ], "sample_taxid": [ "1423959" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.309 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4687840", "Number of Sequences": "24", "Longest Sequences (bp)": "808800", "N50 (bp)": "481969", "Gap Ratio (%)": "0.022484", "GCcontent (%)": "35.8", "Number of CDSs": "4105", "Average Protein Length": "328.1", "Coding Ratio (%)": "86.2", "Number of rRNAs": "3", "Number of tRNAs": "81", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium contaminans", "strain": "strain=DSM 27621", "accession": "GCA_900142615.1", 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"matched_fragments": 686, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.4231, "matched_fragments": 736, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.229, "matched_fragments": 723, "total_fragments": 1550, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.1036, "matched_fragments": 503, "total_fragments": 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