{ "type": "genome", "identifier": "GCF_900142695.1", "organism": "Flavobacterium xanthum", "title": "Flavobacterium xanthum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900142695.1", "bioproject": "PRJNA224116", "biosample": "SAMN05443669", "wgs_master": "FRBU00000000.1", "refseq_category": "reference genome", "taxid": "69322", "species_taxid": "69322", "organism_name": "Flavobacterium xanthum", "infraspecific_name": "strain=DSM 3661", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2700988712 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900142695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/142/695/GCF_900142695.1_IMG-taxon_2700988712_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3755582", "genome_size_ungapped": "3755582", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "101", "contig_count": "101", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900142695.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3292", "protein_coding_gene_count": "3204", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium xanthum" ], "sample_taxid": [ "69322" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.054 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3755582", "Number of Sequences": "101", "Longest Sequences (bp)": "245680", "N50 (bp)": "82483", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.4", "Number of CDSs": "3187", "Average Protein Length": "333.2", "Coding Ratio (%)": "84.8", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium xanthum", "strain": "strain=DSM 3661", "accession": "GCA_900142695.1", 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true, "ani": 84.2076, "matched_fragments": 800, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.9247, "matched_fragments": 419, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.5155, "matched_fragments": 349, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.4394, "matched_fragments": 320, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 76.1451, "matched_fragments": 86, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.1142, "matched_fragments": 74, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900142695.1", "gtdb_species": "s__Flavobacterium xanthum", "ani": 100.0, "matched_fragments": 1196, "total_fragments": 1204, "gtdb_taxonomy": 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