{ "type": "genome", "identifier": "GCF_900143075.1", "organism": "Cyclobacterium lianum", "title": "Cyclobacterium lianum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900143075.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488057", "wgs_master": "FRCY00000000.1", "refseq_category": "reference genome", "taxid": "388280", "species_taxid": "388280", "organism_name": "Cyclobacterium lianum", "infraspecific_name": "strain=CGMCC 1.6102", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2617270779 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900143075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/143/075/GCF_900143075.1_IMG-taxon_2617270779_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5675162", "genome_size_ungapped": "5672899", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900143075.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4632", "protein_coding_gene_count": "4560", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Cyclobacterium lianum" ], "sample_taxid": [ "388280" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.613 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5675162", "Number of Sequences": "31", "Longest Sequences (bp)": "659747", "N50 (bp)": "334938", "Gap Ratio (%)": "0.039876", "GCcontent (%)": "45.5", "Number of CDSs": "4511", "Average Protein Length": "366.7", "Coding Ratio (%)": "87.4", "Number of rRNAs": "2", "Number of tRNAs": "38", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cyclobacterium lianum", "strain": "strain=CGMCC 1.6102", "accession": "GCA_900143075.1", "taxid": 388280, "species_taxid": 388280, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1871, "total_fragments": 1874, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cyclobacterium plantarum", "strain": "strain=GBPx2", "accession": "GCA_011290685.1", "taxid": 2716263, "species_taxid": 2716263, "relation_to_type": "type", "validated": true, "ani": 81.662, "matched_fragments": 1106, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium salsum", "strain": "strain=SYSU L10167", "accession": "GCA_010119245.1", "taxid": 2666329, "species_taxid": 2666329, "relation_to_type": "type", "validated": true, "ani": 78.8559, "matched_fragments": 581, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium jeungdonense", "strain": "strain=KCTC 23150", "accession": "GCA_010994275.1", "taxid": 708087, "species_taxid": 708087, "relation_to_type": "type", "validated": true, "ani": 78.7347, "matched_fragments": 551, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium roseum", "strain": "strain=SYSU L10180", "accession": "GCA_010119225.1", "taxid": 2666137, "species_taxid": 2666137, "relation_to_type": "type", "validated": true, "ani": 78.7098, "matched_fragments": 575, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium xiamenense", "strain": "strain=CGMCC 1.12432", "accession": "GCA_009467825.1", "taxid": 1297121, "species_taxid": 1297121, "relation_to_type": "type", "validated": true, "ani": 78.2919, "matched_fragments": 508, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium qasimii", "strain": "strain=M12-11B", "accession": "GCA_000427295.1", "taxid": 1350429, "species_taxid": 1350429, "relation_to_type": "type", "validated": true, "ani": 77.0585, "matched_fragments": 220, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cyclobacterium qasimii", "strain": "strain=NBRC 106168", "accession": "GCA_007991695.1", "taxid": 1350429, "species_taxid": 1350429, "relation_to_type": "type", "validated": true, "ani": 76.9822, "matched_fragments": 226, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lunatimonas lonarensis", "strain": "strain=AK24", "accession": "GCA_000390185.1", "taxid": 1232681, "species_taxid": 1232681, "relation_to_type": "type", "validated": true, "ani": 76.5613, "matched_fragments": 107, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lunatibacter salilacus", "strain": "strain=CUG 91308", "accession": "GCA_009797935.1", "taxid": 2483804, "species_taxid": 2483804, "relation_to_type": "type", "validated": true, "ani": 76.5318, "matched_fragments": 133, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella aquatica", "strain": "strain=JCM 19468", "accession": "GCA_022549755.1", "taxid": 1323734, "species_taxid": 1323734, "relation_to_type": "type", "validated": true, "ani": 75.904, "matched_fragments": 53, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus terrigena", "strain": "strain=DSM 22685", "accession": "GCA_000429445.1", "taxid": 344884, "species_taxid": 344884, "relation_to_type": "type", "validated": true, "ani": 75.5816, "matched_fragments": 50, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella buryatensis", "strain": "strain=5C", "accession": "GCA_900188245.1", "taxid": 1500549, "species_taxid": 1500549, "relation_to_type": "type", "validated": true, "ani": 75.4138, "matched_fragments": 53, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella kenyensis", "strain": "strain=DSM 46651", "accession": "GCA_022549675.1", "taxid": 1472724, "species_taxid": 1472724, "relation_to_type": "type", "validated": true, "ani": 75.3838, "matched_fragments": 50, "total_fragments": 1874, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900143075.1", "gtdb_species": "s__Cyclobacterium lianum", "ani": 100.0, "matched_fragments": 1871, "total_fragments": 1874, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cyclobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_014762705.1", "gtdb_species": "s__Cyclobacterium sp014762705", "ani": 81.7725, 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