{
    "type": "genome",
    "identifier": "GCF_900143205.1",
    "organism": "Butyrivibrio hungatei DSM 14810",
    "title": "Butyrivibrio hungatei DSM 14810",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900143205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02745247",
        "wgs_master": "FRDH00000000.1",
        "refseq_category": "na",
        "taxid": "1121132",
        "species_taxid": "185008",
        "organism_name": "Butyrivibrio hungatei DSM 14810",
        "infraspecific_name": "strain=DSM 14810",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/12/03",
        "asm_name": "IMG-taxon 2582580726 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900143205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/143/205/GCF_900143205.1_IMG-taxon_2582580726_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3394947",
        "genome_size_ungapped": "3391547",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "22",
        "contig_count": "22",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-28",
        "total_gene_count": "3108",
        "protein_coding_gene_count": "3033",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-12-03",
    "dateModified": "2016-12-03",
    "datePublished": "2016-12-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Butyrivibrio hungatei DSM 14810"
        ],
        "sample_taxid": [
            "1121132"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Czech Republic: Central Bohemia, Mnichovice"
        ],
        "sample_host_location_id": [],
        "data_size": "0.955 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3394947",
        "Number of Sequences": "22",
        "Longest Sequences (bp)": "863493",
        "N50 (bp)": "286711",
        "Gap Ratio (%)": "0.100149",
        "GCcontent (%)": "39.9",
        "Number of CDSs": "3081",
        "Average Protein Length": "335.6",
        "Coding Ratio (%)": "91.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Butyrivibrio hungatei",
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                "species_taxid": 185008,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1118,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Butyrivibrio proteoclasticus",
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                "accession": "GCA_000145035.1",
                "taxid": 43305,
                "species_taxid": 43305,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1365,
                "matched_fragments": 404,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio fibrisolvens",
                "strain": "strain=DSM 3071",
                "accession": "GCA_900129945.1",
                "taxid": 831,
                "species_taxid": 831,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.0312,
                "matched_fragments": 215,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ruminantium",
                "strain": "strain=ATCC 17233",
                "accession": "GCA_900167085.1",
                "taxid": 42322,
                "species_taxid": 42322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7049,
                "matched_fragments": 60,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lachnospira multipara",
                "strain": "strain=ATCC 19207",
                "accession": "GCA_000424105.1",
                "taxid": 28051,
                "species_taxid": 28051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2464,
                "matched_fragments": 68,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_900143205.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
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            {
                "accession": "GCF_900103635.1",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900108105.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_000420825.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017433805.1",
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                "accession": "GCA_015056685.1",
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            },
            {
                "accession": "GCF_000420945.1",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
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}