{ "type": "genome", "identifier": "GCF_900143285.1", "organism": "Desulfitobacterium chlororespirans DSM 11544", "title": "Desulfitobacterium chlororespirans DSM 11544", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900143285.1", "bioproject": "PRJNA224116", "biosample": "SAMN02745215", "wgs_master": "FRDN00000000.1", "refseq_category": "reference genome", "taxid": "1121395", "species_taxid": "51616", "organism_name": "Desulfitobacterium chlororespirans DSM 11544", "infraspecific_name": "strain=DSM 11544", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/03", "asm_name": "IMG-taxon 2582580732 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900143285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/143/285/GCF_900143285.1_IMG-taxon_2582580732_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5606984", "genome_size_ungapped": "5601500", "gc_percent": "47.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900143285.1-RS_2024_05_13", "annotation_date": "2024-05-13", "total_gene_count": "5378", "protein_coding_gene_count": "5237", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-03", "dateModified": "2016-12-03", "datePublished": "2016-12-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfitobacterium chlororespirans DSM 11544" ], "sample_taxid": [ "1121395" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.595 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5606984", "Number of Sequences": "33", "Longest Sequences (bp)": "652070", "N50 (bp)": "359338", "Gap Ratio (%)": "0.097807", "GCcontent (%)": "47.3", "Number of CDSs": "5383", "Average Protein Length": "301.0", "Coding Ratio (%)": "86.7", "Number of rRNAs": "5", "Number of tRNAs": "62", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfitobacterium chlororespirans", "strain": "strain=DSM 11544", "accession": "GCA_900143285.1", "taxid": 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76.5179, "matched_fragments": 55, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Desulfitobacteriia;o__Desulfitobacteriales;f__Desulfitobacteriaceae;g__Desulfosporosinus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.477, "doubling_h": 0.522, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 7.333, "genome_size": 5606984.0, "gc_content": 45.544, "coding_genes": 4081.622, "rRNA16S_genes": 5.777, "tRNA_genes": 70.889, "gram_stain": 0.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Desulfitobacterium", "chlororespirans", "DSM", "11544" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }