{ "type": "genome", "identifier": "GCF_900143745.1", "organism": "Vibrio quintilis", "title": "Vibrio quintilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900143745.1", "bioproject": "PRJNA224116", "biosample": "SAMEA18850168", "wgs_master": "FRFG00000000.1", "refseq_category": "na", "taxid": "1117707", "species_taxid": "1117707", "organism_name": "Vibrio quintilis", "infraspecific_name": "na", "isolate": "CECT 7734", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/12/12", "asm_name": "V.quintilis_CECT7734T_Velvet_Prokka_EMBL", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_900143745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/143/745/GCF_900143745.1_V.quintilis_CECT7734T_Velvet_Prokka_EMBL", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5712823", "genome_size_ungapped": "5712823", "gc_percent": "46.000000", "replicon_count": "0", "scaffold_count": "128", "contig_count": "128", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900143745.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "5252", "protein_coding_gene_count": "5049", "non_coding_gene_count": "99", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-12-12", "dateModified": "2016-12-12", "datePublished": "2016-12-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio quintilis" ], "sample_taxid": [ "1117707" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], 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{ "organism_name": "Vibrio quintilis", "strain": "strain=CECT 7734", "accession": "GCA_024529975.1", "taxid": 1117707, "species_taxid": 1117707, "relation_to_type": "type", "validated": true, "ani": 99.9982, "matched_fragments": 1835, "total_fragments": 1840, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio aerogenes", "strain": "strain=LMG 19650", "accession": "GCA_024346755.1", "taxid": 92172, "species_taxid": 92172, "relation_to_type": "type", "validated": true, "ani": 83.4632, "matched_fragments": 1297, "total_fragments": 1840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aerogenes", "strain": "strain=CECT 7868", "accession": "GCA_900130105.1", "taxid": 92172, "species_taxid": 92172, "relation_to_type": "type", "validated": true, "ani": 83.4019, "matched_fragments": 1301, "total_fragments": 1840, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio zhugei", "strain": "strain=KCTC 62784", 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"ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900143745.1", "gtdb_species": "s__Vibrio quintilis", "ani": 100.0, "matched_fragments": 1831, "total_fragments": 1840, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900130105.1", "gtdb_species": "s__Vibrio aerogenes", "ani": 83.417, "matched_fragments": 1299, "total_fragments": 1840, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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