{ "type": "genome", "identifier": "GCF_900155365.1", "organism": "Collinsella bouchesdurhonensis", "title": "Collinsella bouchesdurhonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900155365.1", "bioproject": "PRJNA224116", "biosample": "SAMEA37051168", "wgs_master": "FTLD00000000.1", "refseq_category": "reference genome", "taxid": "1907654", "species_taxid": "1907654", "organism_name": "Collinsella bouchesdurhonensis", "infraspecific_name": "strain=Marseille-P3296", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/05", "asm_name": "PRJEB18748", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900155365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/155/365/GCF_900155365.1_PRJEB18748", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1876212", "genome_size_ungapped": "1875264", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900155365.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "1711", "protein_coding_gene_count": "1643", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-05", "dateModified": "2017-01-05", "datePublished": "2017-01-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Collinsella bouchesdurhonensis" ], "sample_taxid": [ "1907654" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.531 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1876212", "Number of Sequences": "15", "Longest Sequences (bp)": "651157", "N50 (bp)": "487726", "Gap Ratio (%)": "0.051433", "GCcontent (%)": "57.9", "Number of CDSs": "1713", "Average Protein Length": "319.7", "Coding Ratio (%)": "87.6", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Collinsella bouchesdurhonensis", "strain": "strain=Marseille-P3296", "accession": "GCA_900155365.1", "taxid": 1907654, "species_taxid": 1907654, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 619, "total_fragments": 619, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=NCTC11838", "accession": "GCA_900461335.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 80.6608, "matched_fragments": 258, "total_fragments": 619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=JCM 10188", "accession": "GCA_010509075.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 80.6347, "matched_fragments": 252, "total_fragments": 619, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=ATCC 25986", "accession": "GCA_000169035.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 80.5179, "matched_fragments": 251, "total_fragments": 619, "ani_threshold": 95, "status": "below_threshold" }, { 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