{ "type": "genome", "identifier": "GCF_900155385.1", "organism": "Vreelandella massiliensis", "title": "Vreelandella massiliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900155385.1", "bioproject": "PRJNA224116", "biosample": "SAMEA37051918", "wgs_master": "FTLE00000000.1", "refseq_category": "reference genome", "taxid": "1816686", "species_taxid": "1816686", "organism_name": "Vreelandella massiliensis", "infraspecific_name": "strain=Marseille-P2426T", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/01/05", "asm_name": "PRJEB18749", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_900155385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/155/385/GCF_900155385.1_PRJEB18749", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3435644", "genome_size_ungapped": "3435139", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900155385.1-RS_2024_04_08", "annotation_date": "2024-04-08", "total_gene_count": "3258", "protein_coding_gene_count": "3118", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-01-05", "dateModified": "2017-01-05", "datePublished": "2017-01-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Vreelandella massiliensis" ], "sample_taxid": [ "1816686" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.972 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3435644", "Number of Sequences": "23", "Longest Sequences (bp)": "2081025", "N50 (bp)": "2081025", "Gap Ratio (%)": "0.014873", "GCcontent (%)": "58.3", "Number of CDSs": "3232", "Average Protein Length": "318.0", "Coding Ratio (%)": "89.8", "Number of rRNAs": "6", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas massiliensis", "strain": "strain=Marseille-P2426", "accession": "GCA_900155385.1", "taxid": 1816686, "species_taxid": 1816686, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1135, "total_fragments": 1135, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halomonas salicampi", "strain": "strain=BH103", "accession": "GCA_013415105.1", "taxid": 1449798, "species_taxid": 1449798, "relation_to_type": "type", "validated": true, "ani": 82.7638, "matched_fragments": 761, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aquamarina", "strain": "strain=558", "accession": "GCA_900110265.1", "taxid": 77097, "species_taxid": 77097, "relation_to_type": "type", "validated": true, "ani": 79.2354, "matched_fragments": 374, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas meridiana", "strain": "strain=ACAM 246", "accession": "GCA_900129255.1", "taxid": 29570, "species_taxid": 29570, "relation_to_type": "type", "validated": true, "ani": 79.2083, "matched_fragments": 389, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas songnenensis", "strain": "strain=CGMCC 1.12152", "accession": "GCA_003002925.1", "taxid": 1176243, "species_taxid": 1176243, "relation_to_type": "type", "validated": true, "ani": 79.1068, "matched_fragments": 394, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas meridiana", "strain": "strain=NBRC 15608", "accession": "GCA_006540125.1", "taxid": 29570, "species_taxid": 29570, "relation_to_type": "type", "validated": true, "ani": 79.0585, "matched_fragments": 362, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas arcis", "strain": "strain=CGMCC 1.6494", "accession": "GCA_900103865.1", "taxid": 416873, "species_taxid": 416873, "relation_to_type": "type", "validated": true, "ani": 79.0583, "matched_fragments": 359, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas subglaciescola", "strain": "strain=ACAM 12", "accession": "GCA_900142895.1", "taxid": 29571, "species_taxid": 29571, "relation_to_type": "type", "validated": true, "ani": 78.9767, "matched_fragments": 394, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 78.9317, "matched_fragments": 340, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ventosae", "strain": "strain=CECT 5797", "accession": "GCA_004363555.1", "taxid": 229007, "species_taxid": 229007, "relation_to_type": "type", "validated": true, "ani": 78.8856, "matched_fragments": 324, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas populi", "strain": "strain=MC", "accession": "GCA_003989825.1", "taxid": 2498858, "species_taxid": 2498858, "relation_to_type": "type", "validated": true, "ani": 78.8249, "matched_fragments": 293, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas boliviensis", "strain": "strain=LC1", "accession": "GCA_002265845.1", "taxid": 223527, "species_taxid": 223527, "relation_to_type": "type", "validated": true, "ani": 78.822, "matched_fragments": 369, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas boliviensis", "strain": "strain=LC1", "accession": "GCA_000236035.1", "taxid": 223527, "species_taxid": 223527, "relation_to_type": "type", "validated": true, "ani": 78.7364, "matched_fragments": 373, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 78.6758, "matched_fragments": 354, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 78.6555, "matched_fragments": 310, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas titanicae", "strain": "strain=BH1", "accession": "GCA_000336575.1", "taxid": 664683, "species_taxid": 664683, "relation_to_type": "type", "validated": true, "ani": 78.5712, "matched_fragments": 365, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 78.5314, "matched_fragments": 351, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 78.5251, "matched_fragments": 331, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 78.5101, "matched_fragments": 311, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zhaodongensis", "strain": "strain=NEAU-ST10-25", "accession": "GCA_013415115.1", "taxid": 1176240, "species_taxid": 1176240, "relation_to_type": "type", "validated": true, "ani": 78.4929, "matched_fragments": 263, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 78.4055, "matched_fragments": 306, "total_fragments": 1135, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900155385.1", "gtdb_species": "s__Halomonas massiliensis", "ani": 100.0, "matched_fragments": 1135, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_013415105.1", "gtdb_species": "s__Halomonas salicampi", "ani": 82.7468, "matched_fragments": 764, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000686925.1", "gtdb_species": "s__Halomonas sp000686925", "ani": 79.4425, "matched_fragments": 398, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900110265.1", "gtdb_species": "s__Halomonas aquamarina", "ani": 79.2421, "matched_fragments": 374, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.65", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.80", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_009846525.1", "gtdb_species": "s__Halomonas sp002696125", "ani": 79.2372, "matched_fragments": 410, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.53", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_012427705.1", "gtdb_species": "s__Halomonas piezotolerans", "ani": 79.2093, "matched_fragments": 369, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "98.70", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900103865.1", "gtdb_species": "s__Halomonas arcis", "ani": 79.033, "matched_fragments": 361, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014263395.1", "gtdb_species": "s__Halomonas sp014263395", "ani": 79.0061, "matched_fragments": 368, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900111305.1", "gtdb_species": "s__Halomonas subterranea", "ani": 78.9671, "matched_fragments": 388, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.10", "min_intra_species_ani": "95.10", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900142895.1", "gtdb_species": "s__Halomonas subglaciescola", "ani": 78.9639, "matched_fragments": 393, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004363555.1", "gtdb_species": "s__Halomonas ventosae", "ani": 78.8995, "matched_fragments": 323, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.59", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001507855.1", "gtdb_species": "s__Halomonas sp001507855", "ani": 78.8388, "matched_fragments": 364, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002257525.1", "gtdb_species": "s__Halomonas ventosae_B", "ani": 78.7998, "matched_fragments": 394, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "97.92", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002211105.1", "gtdb_species": "s__Halomonas campaniensis_A", "ani": 78.772, "matched_fragments": 349, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.13", "min_intra_species_ani": "98.13", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000236035.1", "gtdb_species": "s__Halomonas boliviensis", "ani": 78.7476, "matched_fragments": 372, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900104135.1", "gtdb_species": "s__Halomonas shengliensis", "ani": 78.6821, "matched_fragments": 354, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.66", "min_intra_species_ani": "95.66", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004364445.1", "gtdb_species": "s__Halomonas alkaliantarctica", "ani": 78.6144, "matched_fragments": 380, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "96.69", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003202205.1", "gtdb_species": "s__Halomonas sp003202205", "ani": 78.5465, "matched_fragments": 331, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014779595.1", "gtdb_species": "s__Halomonas_B sp014779595", "ani": 78.4673, "matched_fragments": 312, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003182195.1", "gtdb_species": "s__Halomonas sp003182195", "ani": 78.4477, "matched_fragments": 346, "total_fragments": 1135, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.47", "min_intra_species_ani": "95.24", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Vreelandella", "massiliensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }